Hb_001195_130

Information

Type -
Description -
Location Contig1195: 63673-65105
Sequence    

Annotation

kegg
ID rcu:RCOM_1594740
description hypothetical protein
nr
ID XP_002510404.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LEV3
description CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1
trembl
ID B9R7W1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594740 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cbs domain-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05780: 62814-62980 , PASA_asmbl_05782: 63968-64387 , PASA_asmbl_05783: 64664-65064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001847_050 0.1073266967 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
3 Hb_001579_300 0.1271661285 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
4 Hb_006925_050 0.130337408 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
5 Hb_000856_400 0.1403944768 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
6 Hb_004730_020 0.1505037935 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
7 Hb_009222_110 0.1526902878 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
8 Hb_000932_050 0.1553134214 - - annexin [Manihot esculenta]
9 Hb_000388_080 0.1566234643 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
10 Hb_002097_100 0.1570434396 - - protein with unknown function [Ricinus communis]
11 Hb_005144_120 0.1574149305 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
12 Hb_000390_190 0.1584037238 - - ATP binding protein, putative [Ricinus communis]
13 Hb_012807_150 0.1585295745 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
14 Hb_009808_010 0.1613745455 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
15 Hb_000527_080 0.1641995668 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
16 Hb_005348_150 0.1643927112 - - PREDICTED: actin-100-like [Jatropha curcas]
17 Hb_000086_210 0.1644178966 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001450_040 0.1647571527 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
19 Hb_000330_020 0.1661506863 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
20 Hb_005496_020 0.1665834814 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_130 Hb_001195_130 Hb_001847_050 Hb_001847_050 Hb_001195_130--Hb_001847_050 Hb_001579_300 Hb_001579_300 Hb_001195_130--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_001195_130--Hb_006925_050 Hb_000856_400 Hb_000856_400 Hb_001195_130--Hb_000856_400 Hb_004730_020 Hb_004730_020 Hb_001195_130--Hb_004730_020 Hb_009222_110 Hb_009222_110 Hb_001195_130--Hb_009222_110 Hb_002217_320 Hb_002217_320 Hb_001847_050--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_001847_050--Hb_012807_150 Hb_001847_050--Hb_006925_050 Hb_001847_050--Hb_004730_020 Hb_000342_170 Hb_000342_170 Hb_001847_050--Hb_000342_170 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_005511_130 Hb_005511_130 Hb_001579_300--Hb_005511_130 Hb_000388_080 Hb_000388_080 Hb_001579_300--Hb_000388_080 Hb_001579_300--Hb_006925_050 Hb_000527_080 Hb_000527_080 Hb_001579_300--Hb_000527_080 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000193_210 Hb_000193_210 Hb_000856_400--Hb_000193_210 Hb_000856_400--Hb_001579_300 Hb_004730_020--Hb_005511_130 Hb_000032_410 Hb_000032_410 Hb_004730_020--Hb_000032_410 Hb_004730_020--Hb_005357_110 Hb_004730_020--Hb_000527_080 Hb_003740_020 Hb_003740_020 Hb_004730_020--Hb_003740_020 Hb_000300_480 Hb_000300_480 Hb_009222_110--Hb_000300_480 Hb_005144_120 Hb_005144_120 Hb_009222_110--Hb_005144_120 Hb_000056_190 Hb_000056_190 Hb_009222_110--Hb_000056_190 Hb_009222_110--Hb_000856_400 Hb_009222_110--Hb_006925_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41271 1.29047 6.11622 10.4434 0.701059 0.950599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04795 0.892399 0.486796 0.61601 4.85338

CAGE analysis