Hb_000300_480

Information

Type -
Description -
Location Contig300: 427162-427731
Sequence    

Annotation

kegg
ID rcu:RCOM_1321910
description hypothetical protein
nr
ID XP_002525718.1
description hypothetical protein RCOM_1321910 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SI99
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1321910 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_480 0.0 - - hypothetical protein RCOM_1321910 [Ricinus communis]
2 Hb_009222_110 0.1348769865 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
3 Hb_000056_190 0.1368821364 - - hypothetical protein [Ricinus communis]
4 Hb_006925_050 0.161440692 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
5 Hb_001102_160 0.1653179529 - - PREDICTED: galacturonokinase [Jatropha curcas]
6 Hb_000291_290 0.1688208973 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000856_400 0.1697654237 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
8 Hb_003680_030 0.1733617829 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
9 Hb_000330_020 0.1764562151 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
10 Hb_000246_130 0.1772880525 - - tubulin alpha chain, putative [Ricinus communis]
11 Hb_003462_040 0.1794401082 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_001004_080 0.1800960917 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
13 Hb_011310_040 0.1810923346 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
14 Hb_001195_130 0.181382677 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007416_100 0.1838042817 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
16 Hb_000684_220 0.1846329797 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_003207_150 0.186099422 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
18 Hb_034726_010 0.1868032259 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_000139_300 0.1877729142 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
20 Hb_000086_210 0.1877931608 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000300_480 Hb_000300_480 Hb_009222_110 Hb_009222_110 Hb_000300_480--Hb_009222_110 Hb_000056_190 Hb_000056_190 Hb_000300_480--Hb_000056_190 Hb_006925_050 Hb_006925_050 Hb_000300_480--Hb_006925_050 Hb_001102_160 Hb_001102_160 Hb_000300_480--Hb_001102_160 Hb_000291_290 Hb_000291_290 Hb_000300_480--Hb_000291_290 Hb_000856_400 Hb_000856_400 Hb_000300_480--Hb_000856_400 Hb_005144_120 Hb_005144_120 Hb_009222_110--Hb_005144_120 Hb_009222_110--Hb_000056_190 Hb_001195_130 Hb_001195_130 Hb_009222_110--Hb_001195_130 Hb_009222_110--Hb_000856_400 Hb_009222_110--Hb_006925_050 Hb_000330_020 Hb_000330_020 Hb_000056_190--Hb_000330_020 Hb_003462_040 Hb_003462_040 Hb_000056_190--Hb_003462_040 Hb_000349_200 Hb_000349_200 Hb_000056_190--Hb_000349_200 Hb_003680_030 Hb_003680_030 Hb_000056_190--Hb_003680_030 Hb_000271_220 Hb_000271_220 Hb_000056_190--Hb_000271_220 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050 Hb_084147_010 Hb_084147_010 Hb_001102_160--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_001102_160--Hb_012395_110 Hb_004007_070 Hb_004007_070 Hb_001102_160--Hb_004007_070 Hb_019516_060 Hb_019516_060 Hb_001102_160--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_001102_160--Hb_000086_090 Hb_000246_130 Hb_000246_130 Hb_001102_160--Hb_000246_130 Hb_001864_080 Hb_001864_080 Hb_000291_290--Hb_001864_080 Hb_000256_080 Hb_000256_080 Hb_000291_290--Hb_000256_080 Hb_002182_020 Hb_002182_020 Hb_000291_290--Hb_002182_020 Hb_000291_290--Hb_005144_120 Hb_000390_190 Hb_000390_190 Hb_000291_290--Hb_000390_190 Hb_000291_290--Hb_006925_050 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_000856_400--Hb_001195_130 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000193_210 Hb_000193_210 Hb_000856_400--Hb_000193_210 Hb_001579_300 Hb_001579_300 Hb_000856_400--Hb_001579_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17478 3.07724 9.67839 24.0574 2.29284 1.71457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84712 1.14819 1.89601 0.751787 10.6706

CAGE analysis