Hb_001864_080

Information

Type -
Description -
Location Contig1864: 68907-69880
Sequence    

Annotation

kegg
ID rcu:RCOM_0906560
description hypothetical protein
nr
ID XP_012091428.1
description PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21295 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18406: 67956-69893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_080 0.0 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
2 Hb_000291_290 0.1155993253 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000256_080 0.1315836133 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
4 Hb_000962_070 0.1467647214 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000069_360 0.1527103927 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000390_190 0.1563038367 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000096_190 0.1574108749 - - unknown [Lotus japonicus]
8 Hb_000086_210 0.1591973381 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_006925_050 0.1600924613 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
10 Hb_001369_100 0.1606399658 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
11 Hb_003462_080 0.1670077871 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_000139_300 0.1674559011 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
13 Hb_009079_050 0.1683060643 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
14 Hb_004306_110 0.1698829098 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
15 Hb_002759_120 0.1701581511 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005144_120 0.1708541216 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
17 Hb_073973_120 0.1728496282 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000566_010 0.1733682787 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_008179_030 0.1734175313 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
20 Hb_000188_060 0.1757486056 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001864_080 Hb_001864_080 Hb_000291_290 Hb_000291_290 Hb_001864_080--Hb_000291_290 Hb_000256_080 Hb_000256_080 Hb_001864_080--Hb_000256_080 Hb_000962_070 Hb_000962_070 Hb_001864_080--Hb_000962_070 Hb_000069_360 Hb_000069_360 Hb_001864_080--Hb_000069_360 Hb_000390_190 Hb_000390_190 Hb_001864_080--Hb_000390_190 Hb_000096_190 Hb_000096_190 Hb_001864_080--Hb_000096_190 Hb_000291_290--Hb_000256_080 Hb_002182_020 Hb_002182_020 Hb_000291_290--Hb_002182_020 Hb_005144_120 Hb_005144_120 Hb_000291_290--Hb_005144_120 Hb_000291_290--Hb_000390_190 Hb_006925_050 Hb_006925_050 Hb_000291_290--Hb_006925_050 Hb_000256_080--Hb_000962_070 Hb_000796_150 Hb_000796_150 Hb_000256_080--Hb_000796_150 Hb_007044_090 Hb_007044_090 Hb_000256_080--Hb_007044_090 Hb_000256_080--Hb_006925_050 Hb_000962_070--Hb_000096_190 Hb_042083_040 Hb_042083_040 Hb_000962_070--Hb_042083_040 Hb_000962_070--Hb_000796_150 Hb_000638_070 Hb_000638_070 Hb_000962_070--Hb_000638_070 Hb_000181_350 Hb_000181_350 Hb_000962_070--Hb_000181_350 Hb_000057_110 Hb_000057_110 Hb_000962_070--Hb_000057_110 Hb_000566_010 Hb_000566_010 Hb_000069_360--Hb_000566_010 Hb_000327_200 Hb_000327_200 Hb_000069_360--Hb_000327_200 Hb_003994_080 Hb_003994_080 Hb_000069_360--Hb_003994_080 Hb_000140_060 Hb_000140_060 Hb_000069_360--Hb_000140_060 Hb_003752_090 Hb_003752_090 Hb_000069_360--Hb_003752_090 Hb_003020_250 Hb_003020_250 Hb_000069_360--Hb_003020_250 Hb_004306_110 Hb_004306_110 Hb_000390_190--Hb_004306_110 Hb_000062_400 Hb_000062_400 Hb_000390_190--Hb_000062_400 Hb_000860_060 Hb_000860_060 Hb_000390_190--Hb_000860_060 Hb_000189_480 Hb_000189_480 Hb_000390_190--Hb_000189_480 Hb_001976_030 Hb_001976_030 Hb_000390_190--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_000390_190--Hb_000920_310 Hb_000049_180 Hb_000049_180 Hb_000096_190--Hb_000049_180 Hb_002759_120 Hb_002759_120 Hb_000096_190--Hb_002759_120 Hb_000096_190--Hb_042083_040 Hb_000049_160 Hb_000049_160 Hb_000096_190--Hb_000049_160 Hb_000096_190--Hb_002182_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0623 1.91908 5.08572 8.87095 1.53395 0.460843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58553 2.90806 0.735949 0.423763 6.7935

CAGE analysis