Hb_000291_290

Information

Type -
Description -
Location Contig291: 262606-265023
Sequence    

Annotation

kegg
ID rcu:RCOM_1033390
description hypothetical protein
nr
ID XP_002513864.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GWJ6
description Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1
trembl
ID B9RJE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30529: 262606-263464 , PASA_asmbl_30530: 262260-264696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001864_080 0.1155993253 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
3 Hb_000256_080 0.1400297459 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
4 Hb_002182_020 0.1433112823 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_005144_120 0.1521963344 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
6 Hb_000390_190 0.1596797542 - - ATP binding protein, putative [Ricinus communis]
7 Hb_006925_050 0.1634616077 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
8 Hb_000962_070 0.1647818352 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_000086_210 0.1651276978 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000300_480 0.1688208973 - - hypothetical protein RCOM_1321910 [Ricinus communis]
11 Hb_011310_180 0.1689580466 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
12 Hb_003462_080 0.1705291353 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
13 Hb_000096_190 0.1725462692 - - unknown [Lotus japonicus]
14 Hb_001842_020 0.1728048683 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
15 Hb_000049_160 0.1734310365 - - tyrosine decarboxylase family protein [Populus trichocarpa]
16 Hb_000853_180 0.1738736954 - - kinesin heavy chain, putative [Ricinus communis]
17 Hb_001195_130 0.1748157217 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003209_010 0.1756265511 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
19 Hb_005563_010 0.1765919784 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
20 Hb_000566_010 0.1795106247 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000291_290 Hb_000291_290 Hb_001864_080 Hb_001864_080 Hb_000291_290--Hb_001864_080 Hb_000256_080 Hb_000256_080 Hb_000291_290--Hb_000256_080 Hb_002182_020 Hb_002182_020 Hb_000291_290--Hb_002182_020 Hb_005144_120 Hb_005144_120 Hb_000291_290--Hb_005144_120 Hb_000390_190 Hb_000390_190 Hb_000291_290--Hb_000390_190 Hb_006925_050 Hb_006925_050 Hb_000291_290--Hb_006925_050 Hb_001864_080--Hb_000256_080 Hb_000962_070 Hb_000962_070 Hb_001864_080--Hb_000962_070 Hb_000069_360 Hb_000069_360 Hb_001864_080--Hb_000069_360 Hb_001864_080--Hb_000390_190 Hb_000096_190 Hb_000096_190 Hb_001864_080--Hb_000096_190 Hb_000256_080--Hb_000962_070 Hb_000796_150 Hb_000796_150 Hb_000256_080--Hb_000796_150 Hb_007044_090 Hb_007044_090 Hb_000256_080--Hb_007044_090 Hb_000256_080--Hb_006925_050 Hb_002182_020--Hb_000096_190 Hb_002759_120 Hb_002759_120 Hb_002182_020--Hb_002759_120 Hb_000749_020 Hb_000749_020 Hb_002182_020--Hb_000749_020 Hb_000049_160 Hb_000049_160 Hb_002182_020--Hb_000049_160 Hb_000086_210 Hb_000086_210 Hb_002182_020--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_002182_020--Hb_005563_010 Hb_005144_120--Hb_000086_210 Hb_011004_050 Hb_011004_050 Hb_005144_120--Hb_011004_050 Hb_008179_030 Hb_008179_030 Hb_005144_120--Hb_008179_030 Hb_009222_110 Hb_009222_110 Hb_005144_120--Hb_009222_110 Hb_000328_010 Hb_000328_010 Hb_005144_120--Hb_000328_010 Hb_005144_120--Hb_005563_010 Hb_004306_110 Hb_004306_110 Hb_000390_190--Hb_004306_110 Hb_000062_400 Hb_000062_400 Hb_000390_190--Hb_000062_400 Hb_000860_060 Hb_000860_060 Hb_000390_190--Hb_000860_060 Hb_000189_480 Hb_000189_480 Hb_000390_190--Hb_000189_480 Hb_001976_030 Hb_001976_030 Hb_000390_190--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_000390_190--Hb_000920_310 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40166 1.3954 6.83216 10.9358 0.750178 0.420428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45184 2.79142 0.634815 0.645344 7.449

CAGE analysis