Hb_009222_110

Information

Type -
Description -
Location Contig9222: 146367-146861
Sequence    

Annotation

kegg
ID rcu:RCOM_1247650
description hypothetical protein
nr
ID XP_012075021.1
description PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
swissprot
ID P0C041
description Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2
trembl
ID B9SP12
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1247650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009222_110 0.0 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
2 Hb_000300_480 0.1348769865 - - hypothetical protein RCOM_1321910 [Ricinus communis]
3 Hb_005144_120 0.1402035674 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
4 Hb_000056_190 0.1445983746 - - hypothetical protein [Ricinus communis]
5 Hb_001195_130 0.1526902878 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000856_400 0.1657620882 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
7 Hb_006925_050 0.1730033903 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
8 Hb_001847_050 0.1732719805 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
9 Hb_001049_150 0.1778341318 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
10 Hb_000330_020 0.1797098057 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_009808_010 0.1851351596 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
12 Hb_000291_290 0.1852881394 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003680_030 0.1869890771 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
14 Hb_000390_190 0.188635568 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001864_080 0.1889767076 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
16 Hb_003462_040 0.1900102557 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_048476_030 0.1909302218 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
18 Hb_001579_300 0.1923574737 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
19 Hb_000139_300 0.1924135292 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
20 Hb_000853_180 0.1926914171 - - kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_009222_110 Hb_009222_110 Hb_000300_480 Hb_000300_480 Hb_009222_110--Hb_000300_480 Hb_005144_120 Hb_005144_120 Hb_009222_110--Hb_005144_120 Hb_000056_190 Hb_000056_190 Hb_009222_110--Hb_000056_190 Hb_001195_130 Hb_001195_130 Hb_009222_110--Hb_001195_130 Hb_000856_400 Hb_000856_400 Hb_009222_110--Hb_000856_400 Hb_006925_050 Hb_006925_050 Hb_009222_110--Hb_006925_050 Hb_000300_480--Hb_000056_190 Hb_000300_480--Hb_006925_050 Hb_001102_160 Hb_001102_160 Hb_000300_480--Hb_001102_160 Hb_000291_290 Hb_000291_290 Hb_000300_480--Hb_000291_290 Hb_000300_480--Hb_000856_400 Hb_000086_210 Hb_000086_210 Hb_005144_120--Hb_000086_210 Hb_011004_050 Hb_011004_050 Hb_005144_120--Hb_011004_050 Hb_008179_030 Hb_008179_030 Hb_005144_120--Hb_008179_030 Hb_000328_010 Hb_000328_010 Hb_005144_120--Hb_000328_010 Hb_005563_010 Hb_005563_010 Hb_005144_120--Hb_005563_010 Hb_000330_020 Hb_000330_020 Hb_000056_190--Hb_000330_020 Hb_003462_040 Hb_003462_040 Hb_000056_190--Hb_003462_040 Hb_000349_200 Hb_000349_200 Hb_000056_190--Hb_000349_200 Hb_003680_030 Hb_003680_030 Hb_000056_190--Hb_003680_030 Hb_000271_220 Hb_000271_220 Hb_000056_190--Hb_000271_220 Hb_001847_050 Hb_001847_050 Hb_001195_130--Hb_001847_050 Hb_001579_300 Hb_001579_300 Hb_001195_130--Hb_001579_300 Hb_001195_130--Hb_006925_050 Hb_001195_130--Hb_000856_400 Hb_004730_020 Hb_004730_020 Hb_001195_130--Hb_004730_020 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000193_210 Hb_000193_210 Hb_000856_400--Hb_000193_210 Hb_000856_400--Hb_001579_300 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_006925_050--Hb_001847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.573492 0.481415 1.96382 3.20721 0.571735 0.110121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.682268 0.107197 0.362452 0.0892122 1.79955

CAGE analysis