Hb_001450_040

Information

Type -
Description -
Location Contig1450: 53087-55519
Sequence    

Annotation

kegg
ID pda:103705349
description tubulin alpha chain
nr
ID XP_012093180.1
description PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
swissprot
ID P33629
description Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1
trembl
ID A0A067L806
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16385 PE=3 SV=1
Gene Ontology
ID GO:0005737
description alpha tubulin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11709: 52953-55507 , PASA_asmbl_11710: 52953-55500
cDNA
(Sanger)
(ID:Location)		 001_D03.ab1: 53885-55498 , 001_N19.ab1: 54142-55502 , 003_M05.ab1: 53655-54731 , 003_O13.ab1: 53884-55412 , 004_E22.ab1: 54176-55502 , 004_N03.ab1: 54149-55501 , 006_M06.ab1: 54147-55498 , 007_B03.ab1: 54142-55498 , 007_E08.ab1: 54173-55498 , 007_I23.ab1: 54146-55498 , 007_M19.ab1: 54175-55498 , 008_F06.ab1: 54231-55498 , 008_G01.ab1: 54287-55509 , 008_J08.ab1: 54269-55515 , 008_O02.ab1: 54206-55498 , 009_F02.ab1: 54227-55498 , 009_J15.ab1: 54133-55500 , 012_A15.ab1: 54143-55500 , 012_J14.ab1: 54335-55498 , 012_O12.ab1: 54161-55498 , 014_M03.ab1: 54158-55498 , 015_C02.ab1: 54271-55471 , 015_G21.ab1: 53110-53328 , 017_C18.ab1: 54238-55498 , 017_D21.ab1: 54200-55498 , 017_J23.ab1: 54142-55498 , 018_H07.ab1: 54205-55498 , 019_P01.ab1: 54138-55498 , 020_J06.ab1: 54118-55498 , 020_M19.ab1: 54279-55498 , 021_J20.ab1: 54233-55497 , 021_P04.ab1: 54116-55498 , 027_G07.ab1: 54231-55498 , 028_D14.ab1: 54640-55500 , 031_D06.ab1: 54139-55515 , 034_A09.ab1: 54138-55498 , 035_A03.ab1: 54176-55498 , 036_E14.ab1: 54134-55498 , 036_I01.ab1: 54676-55487 , 037_B11.ab1: 54115-55498 , 037_N18.ab1: 54137-55498 , 037_O09.ab1: 54169-55515 , 038_C05.ab1: 54117-55498 , 038_M20.ab1: 54137-55498 , 040_E10.ab1: 54154-55498 , 041_A02.ab1: 54420-55498 , 041_E01.ab1: 54250-55498 , 041_L08.ab1: 54278-55502 , 045_E22.ab1: 53847-55412 , 045_O09.ab1: 54140-55498 , 047_A14.ab1: 54131-55498 , 047_F02.ab1: 54155-55498 , 048_E10.ab1: 54150-55498 , 048_G23.ab1: 54182-55498 , 048_M18.ab1: 54174-55490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001450_040 0.0 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
2 Hb_000932_050 0.09077186 - - annexin [Manihot esculenta]
3 Hb_000527_080 0.1025349675 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
4 Hb_003408_010 0.1182374696 - - fructokinase [Manihot esculenta]
5 Hb_031284_030 0.1270901238 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000023_110 0.1332610364 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
7 Hb_012807_150 0.1379202635 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
8 Hb_004710_010 0.1389990107 - - hypothetical protein EUGRSUZ_D010351, partial [Eucalyptus grandis]
9 Hb_000049_270 0.1425235993 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
10 Hb_006351_020 0.1436643903 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_000856_400 0.1458795029 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
12 Hb_000327_360 0.1469330914 - - unnamed protein product [Coffea canephora]
13 Hb_022693_110 0.1470227579 - - phosphate transporter [Manihot esculenta]
14 Hb_006570_090 0.1471728643 - - tubulin beta chain, putative [Ricinus communis]
15 Hb_001579_300 0.1474550959 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
16 Hb_006120_060 0.1522305596 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
17 Hb_004730_020 0.1530408862 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
18 Hb_000963_050 0.1555067157 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
19 Hb_001847_050 0.1558487042 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
20 Hb_000689_050 0.1567042692 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001450_040 Hb_001450_040 Hb_000932_050 Hb_000932_050 Hb_001450_040--Hb_000932_050 Hb_000527_080 Hb_000527_080 Hb_001450_040--Hb_000527_080 Hb_003408_010 Hb_003408_010 Hb_001450_040--Hb_003408_010 Hb_031284_030 Hb_031284_030 Hb_001450_040--Hb_031284_030 Hb_000023_110 Hb_000023_110 Hb_001450_040--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_001450_040--Hb_012807_150 Hb_000932_050--Hb_003408_010 Hb_000856_400 Hb_000856_400 Hb_000932_050--Hb_000856_400 Hb_000932_050--Hb_000023_110 Hb_010889_010 Hb_010889_010 Hb_000932_050--Hb_010889_010 Hb_064546_010 Hb_064546_010 Hb_000932_050--Hb_064546_010 Hb_004545_080 Hb_004545_080 Hb_000527_080--Hb_004545_080 Hb_004730_020 Hb_004730_020 Hb_000527_080--Hb_004730_020 Hb_000689_050 Hb_000689_050 Hb_000527_080--Hb_000689_050 Hb_003894_030 Hb_003894_030 Hb_000527_080--Hb_003894_030 Hb_003740_020 Hb_003740_020 Hb_000527_080--Hb_003740_020 Hb_001401_040 Hb_001401_040 Hb_003408_010--Hb_001401_040 Hb_003408_010--Hb_000023_110 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_006351_020 Hb_006351_020 Hb_031284_030--Hb_006351_020 Hb_031284_030--Hb_000023_110 Hb_000152_190 Hb_000152_190 Hb_031284_030--Hb_000152_190 Hb_006889_030 Hb_006889_030 Hb_031284_030--Hb_006889_030 Hb_000327_360 Hb_000327_360 Hb_031284_030--Hb_000327_360 Hb_000049_270 Hb_000049_270 Hb_000023_110--Hb_000049_270 Hb_000023_110--Hb_000327_360 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_000283_140 Hb_000283_140 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
146.421 82.3641 726.317 1079.75 93.7905 60.9998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5539 26.7952 116.503 198.733 473.12

CAGE analysis