Hb_000932_050

Information

Type -
Description -
Location Contig932: 79047-81857
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05490g
description POPTRDRAFT_654779; annexin-like protein RJ4
nr
ID AJJ90387.1
description annexin [Manihot esculenta]
swissprot
ID Q9XEE2
description Annexin D2 OS=Arabidopsis thaliana GN=ANN2 PE=1 SV=1
trembl
ID A0A0C4ZQZ2
description Ann1 protein OS=Manihot esculenta GN=Ann1 PE=2 SV=1
Gene Ontology
ID GO:0005509
description annexin d2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62861: 79050-81825 , PASA_asmbl_62862: 81164-81630
cDNA
(Sanger)
(ID:Location)		 014_H04.ab1: 79485-81815 , 018_P11.ab1: 79485-81783

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000932_050 0.0 - - annexin [Manihot esculenta]
2 Hb_001450_040 0.09077186 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
3 Hb_003408_010 0.0940787448 - - fructokinase [Manihot esculenta]
4 Hb_000856_400 0.1002707209 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
5 Hb_000023_110 0.131571018 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
6 Hb_010889_010 0.144603141 - - PREDICTED: myosin-12 [Jatropha curcas]
7 Hb_064546_010 0.1457568765 - - PREDICTED: peroxidase 3 [Jatropha curcas]
8 Hb_000527_080 0.1462536408 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
9 Hb_001180_010 0.1526757291 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
10 Hb_001357_050 0.1549030098 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
11 Hb_001195_130 0.1553134214 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004994_330 0.1581006756 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000061_400 0.161813464 - - dimethylaniline monooxygenase, putative [Ricinus communis]
14 Hb_022693_110 0.1626147834 - - phosphate transporter [Manihot esculenta]
15 Hb_000049_270 0.1627387211 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
16 Hb_001401_040 0.1629777018 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
17 Hb_017439_010 0.1638761173 - - putative actin-97 protein [Linum usitatissimum]
18 Hb_004710_010 0.1643374959 - - hypothetical protein EUGRSUZ_D010351, partial [Eucalyptus grandis]
19 Hb_048476_140 0.1650084126 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
20 Hb_001579_300 0.1677366503 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]

Gene co-expression network

sample Hb_000932_050 Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_000932_050--Hb_001450_040 Hb_003408_010 Hb_003408_010 Hb_000932_050--Hb_003408_010 Hb_000856_400 Hb_000856_400 Hb_000932_050--Hb_000856_400 Hb_000023_110 Hb_000023_110 Hb_000932_050--Hb_000023_110 Hb_010889_010 Hb_010889_010 Hb_000932_050--Hb_010889_010 Hb_064546_010 Hb_064546_010 Hb_000932_050--Hb_064546_010 Hb_000527_080 Hb_000527_080 Hb_001450_040--Hb_000527_080 Hb_001450_040--Hb_003408_010 Hb_031284_030 Hb_031284_030 Hb_001450_040--Hb_031284_030 Hb_001450_040--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_001450_040--Hb_012807_150 Hb_001401_040 Hb_001401_040 Hb_003408_010--Hb_001401_040 Hb_003408_010--Hb_000023_110 Hb_000108_240 Hb_000108_240 Hb_003408_010--Hb_000108_240 Hb_008725_080 Hb_008725_080 Hb_003408_010--Hb_008725_080 Hb_001195_130 Hb_001195_130 Hb_000856_400--Hb_001195_130 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_000856_400--Hb_001450_040 Hb_000193_210 Hb_000193_210 Hb_000856_400--Hb_000193_210 Hb_001579_300 Hb_001579_300 Hb_000856_400--Hb_001579_300 Hb_000049_270 Hb_000049_270 Hb_000023_110--Hb_000049_270 Hb_000327_360 Hb_000327_360 Hb_000023_110--Hb_000327_360 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_000023_110--Hb_031284_030 Hb_004117_090 Hb_004117_090 Hb_010889_010--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_010889_010--Hb_010381_100 Hb_003055_090 Hb_003055_090 Hb_010889_010--Hb_003055_090 Hb_003813_090 Hb_003813_090 Hb_010889_010--Hb_003813_090 Hb_005496_040 Hb_005496_040 Hb_010889_010--Hb_005496_040 Hb_003728_110 Hb_003728_110 Hb_010889_010--Hb_003728_110 Hb_000984_130 Hb_000984_130 Hb_064546_010--Hb_000984_130 Hb_000735_020 Hb_000735_020 Hb_064546_010--Hb_000735_020 Hb_001357_050 Hb_001357_050 Hb_064546_010--Hb_001357_050 Hb_116647_010 Hb_116647_010 Hb_064546_010--Hb_116647_010 Hb_064546_010--Hb_003606_050 Hb_033312_070 Hb_033312_070 Hb_064546_010--Hb_033312_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9542 11.2823 157.382 228.763 7.20433 8.76548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3949 4.89885 17.015 27.9048 103.499

CAGE analysis