Hb_003055_090

Information

Type -
Description -
Location Contig3055: 66901-67851
Sequence    

Annotation

kegg
ID rcu:RCOM_1062680
description hypothetical protein
nr
ID XP_012091540.1
description PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21385 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_090 0.0 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
2 Hb_001401_040 0.0995790674 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
3 Hb_003728_110 0.1243142191 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
4 Hb_017439_010 0.1267925729 - - putative actin-97 protein [Linum usitatissimum]
5 Hb_010889_010 0.1280019908 - - PREDICTED: myosin-12 [Jatropha curcas]
6 Hb_003992_280 0.1392150629 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
7 Hb_001268_160 0.1392689718 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
8 Hb_000567_290 0.1431048046 - - hypothetical protein RCOM_0303940 [Ricinus communis]
9 Hb_003813_090 0.1434275532 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
10 Hb_001863_010 0.1475984001 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
11 Hb_000061_400 0.154356018 - - dimethylaniline monooxygenase, putative [Ricinus communis]
12 Hb_000107_360 0.1568484424 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
13 Hb_002030_130 0.162784526 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_000190_220 0.1634905296 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
15 Hb_004531_080 0.1643342602 - - hypothetical protein RCOM_1491960 [Ricinus communis]
16 Hb_003408_010 0.1649544271 - - fructokinase [Manihot esculenta]
17 Hb_000172_090 0.1655108314 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
18 Hb_000956_050 0.1667697695 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
19 Hb_006693_010 0.1670851042 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
20 Hb_000740_150 0.1679480087 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]

Gene co-expression network

sample Hb_003055_090 Hb_003055_090 Hb_001401_040 Hb_001401_040 Hb_003055_090--Hb_001401_040 Hb_003728_110 Hb_003728_110 Hb_003055_090--Hb_003728_110 Hb_017439_010 Hb_017439_010 Hb_003055_090--Hb_017439_010 Hb_010889_010 Hb_010889_010 Hb_003055_090--Hb_010889_010 Hb_003992_280 Hb_003992_280 Hb_003055_090--Hb_003992_280 Hb_001268_160 Hb_001268_160 Hb_003055_090--Hb_001268_160 Hb_001408_170 Hb_001408_170 Hb_001401_040--Hb_001408_170 Hb_003408_010 Hb_003408_010 Hb_001401_040--Hb_003408_010 Hb_004650_030 Hb_004650_030 Hb_001401_040--Hb_004650_030 Hb_001401_040--Hb_017439_010 Hb_001401_040--Hb_001268_160 Hb_003728_110--Hb_003992_280 Hb_002292_080 Hb_002292_080 Hb_003728_110--Hb_002292_080 Hb_003606_050 Hb_003606_050 Hb_003728_110--Hb_003606_050 Hb_003935_040 Hb_003935_040 Hb_003728_110--Hb_003935_040 Hb_030685_010 Hb_030685_010 Hb_003728_110--Hb_030685_010 Hb_002498_030 Hb_002498_030 Hb_017439_010--Hb_002498_030 Hb_017439_010--Hb_001268_160 Hb_017439_010--Hb_010889_010 Hb_000328_010 Hb_000328_010 Hb_017439_010--Hb_000328_010 Hb_004117_090 Hb_004117_090 Hb_010889_010--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_010889_010--Hb_010381_100 Hb_003813_090 Hb_003813_090 Hb_010889_010--Hb_003813_090 Hb_005496_040 Hb_005496_040 Hb_010889_010--Hb_005496_040 Hb_010889_010--Hb_003728_110 Hb_000300_190 Hb_000300_190 Hb_003992_280--Hb_000300_190 Hb_003055_080 Hb_003055_080 Hb_003992_280--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_003992_280--Hb_002965_060 Hb_001195_550 Hb_001195_550 Hb_003992_280--Hb_001195_550 Hb_000020_050 Hb_000020_050 Hb_003992_280--Hb_000020_050 Hb_001268_160--Hb_001408_170 Hb_000008_200 Hb_000008_200 Hb_001268_160--Hb_000008_200 Hb_010381_040 Hb_010381_040 Hb_001268_160--Hb_010381_040 Hb_008053_030 Hb_008053_030 Hb_001268_160--Hb_008053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.818228 0.826549 14.2599 16.3097 0.160703 0.126626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.755577 1.44313 0.856438 2.03379 3.02777

CAGE analysis