Hb_003055_080

Information

Type -
Description -
Location Contig3055: 57144-62547
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04540g
description POPTRDRAFT_660409; hypothetical protein
nr
ID XP_012091538.1
description PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
swissprot
ID Q6R2K3
description Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=2 SV=1
trembl
ID A0A067JDS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21384 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein strubbelig-receptor family 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32247: 57072-57943 , PASA_asmbl_32248: 58392-60055 , PASA_asmbl_32249: 60198-61119 , PASA_asmbl_32250: 62345-62537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_080 0.0 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
2 Hb_000300_190 0.0966746345 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
3 Hb_002965_060 0.1011431784 - - Protein COBRA precursor, putative [Ricinus communis]
4 Hb_000878_120 0.1028159852 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
5 Hb_001195_550 0.1098304567 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
6 Hb_006351_030 0.1175114656 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
7 Hb_000375_260 0.118543225 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
8 Hb_003992_280 0.1199931873 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
9 Hb_006120_130 0.1210480178 - - -
10 Hb_002639_050 0.1222528956 - - multicopper oxidase, putative [Ricinus communis]
11 Hb_003935_040 0.1237773961 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
12 Hb_006120_210 0.1266670528 - - gibberellin 20-oxidase, putative [Ricinus communis]
13 Hb_030685_010 0.1280956425 - - -
14 Hb_001188_050 0.1319654952 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003992_020 0.1327835024 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
16 Hb_008725_100 0.1334630798 - - PREDICTED: histone H1-like [Jatropha curcas]
17 Hb_000996_040 0.1338601368 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
18 Hb_000975_090 0.1347626636 - - Zeamatin precursor, putative [Ricinus communis]
19 Hb_001159_090 0.1367811754 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
20 Hb_000316_060 0.1371093581 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]

Gene co-expression network

sample Hb_003055_080 Hb_003055_080 Hb_000300_190 Hb_000300_190 Hb_003055_080--Hb_000300_190 Hb_002965_060 Hb_002965_060 Hb_003055_080--Hb_002965_060 Hb_000878_120 Hb_000878_120 Hb_003055_080--Hb_000878_120 Hb_001195_550 Hb_001195_550 Hb_003055_080--Hb_001195_550 Hb_006351_030 Hb_006351_030 Hb_003055_080--Hb_006351_030 Hb_000375_260 Hb_000375_260 Hb_003055_080--Hb_000375_260 Hb_003992_280 Hb_003992_280 Hb_000300_190--Hb_003992_280 Hb_000300_190--Hb_002965_060 Hb_006120_130 Hb_006120_130 Hb_000300_190--Hb_006120_130 Hb_002639_050 Hb_002639_050 Hb_000300_190--Hb_002639_050 Hb_000300_190--Hb_000375_260 Hb_002965_060--Hb_003992_280 Hb_002965_060--Hb_006120_130 Hb_002965_060--Hb_000375_260 Hb_003728_110 Hb_003728_110 Hb_002965_060--Hb_003728_110 Hb_000878_120--Hb_006351_030 Hb_000862_050 Hb_000862_050 Hb_000878_120--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_000878_120--Hb_008725_100 Hb_177195_010 Hb_177195_010 Hb_000878_120--Hb_177195_010 Hb_000878_120--Hb_006120_130 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_070498_010 Hb_070498_010 Hb_001195_550--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_001195_550--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_001195_550--Hb_001159_090 Hb_001195_550--Hb_002639_050 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_001782_100 Hb_001782_100 Hb_006351_030--Hb_001782_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_000152_590 Hb_000152_590 Hb_006351_030--Hb_000152_590 Hb_006916_120 Hb_006916_120 Hb_006351_030--Hb_006916_120 Hb_000375_260--Hb_001159_090 Hb_001709_090 Hb_001709_090 Hb_000375_260--Hb_001709_090 Hb_043552_010 Hb_043552_010 Hb_000375_260--Hb_043552_010 Hb_000375_260--Hb_006120_130 Hb_002028_270 Hb_002028_270 Hb_000375_260--Hb_002028_270 Hb_003992_020 Hb_003992_020 Hb_000375_260--Hb_003992_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108753 1.98684 6.43602 8.2095 0.159123 0.136091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0855198 0.053836 0.0256736 1.42671 1.08786

CAGE analysis