Hb_000878_120

Information

Type -
Description -
Location Contig878: 190938-202754
Sequence    

Annotation

kegg
ID rcu:RCOM_0422700
description hypothetical protein
nr
ID XP_012074255.1
description PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
swissprot
ID Q54CY9
description Probable myosin light chain kinase DDB_G0292624 OS=Dictyostelium discoideum GN=DDB_G0292624 PE=3 SV=1
trembl
ID A0A067KW43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08713 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein downstream neighbor of son

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61309: 192162-197607 , PASA_asmbl_61310: 197620-198600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_120 0.0 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
2 Hb_003055_080 0.1028159852 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
3 Hb_006351_030 0.1080433113 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
4 Hb_000862_050 0.1120374025 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
5 Hb_008725_100 0.1121048223 - - PREDICTED: histone H1-like [Jatropha curcas]
6 Hb_177195_010 0.1177712585 - - Leucine-rich repeat protein kinase family protein isoform 3, partial [Theobroma cacao]
7 Hb_006120_130 0.1221900467 - - -
8 Hb_000996_040 0.128517192 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
9 Hb_001377_370 0.1291818889 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
10 Hb_000098_270 0.1319934914 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
11 Hb_001782_100 0.1369256265 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_000193_060 0.1397533776 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
13 Hb_000592_100 0.1408463735 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
14 Hb_007590_110 0.1409902898 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
15 Hb_006153_010 0.1414527459 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
16 Hb_012150_040 0.1428063868 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000300_190 0.1445809102 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
18 Hb_006810_040 0.1457136323 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_007126_010 0.1470985153 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_000289_020 0.1471706422 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]

Gene co-expression network

sample Hb_000878_120 Hb_000878_120 Hb_003055_080 Hb_003055_080 Hb_000878_120--Hb_003055_080 Hb_006351_030 Hb_006351_030 Hb_000878_120--Hb_006351_030 Hb_000862_050 Hb_000862_050 Hb_000878_120--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_000878_120--Hb_008725_100 Hb_177195_010 Hb_177195_010 Hb_000878_120--Hb_177195_010 Hb_006120_130 Hb_006120_130 Hb_000878_120--Hb_006120_130 Hb_000300_190 Hb_000300_190 Hb_003055_080--Hb_000300_190 Hb_002965_060 Hb_002965_060 Hb_003055_080--Hb_002965_060 Hb_001195_550 Hb_001195_550 Hb_003055_080--Hb_001195_550 Hb_003055_080--Hb_006351_030 Hb_000375_260 Hb_000375_260 Hb_003055_080--Hb_000375_260 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_001782_100 Hb_001782_100 Hb_006351_030--Hb_001782_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_000152_590 Hb_000152_590 Hb_006351_030--Hb_000152_590 Hb_006916_120 Hb_006916_120 Hb_006351_030--Hb_006916_120 Hb_000862_050--Hb_008725_100 Hb_000592_100 Hb_000592_100 Hb_000862_050--Hb_000592_100 Hb_004005_060 Hb_004005_060 Hb_000862_050--Hb_004005_060 Hb_000862_050--Hb_006120_130 Hb_006810_040 Hb_006810_040 Hb_000862_050--Hb_006810_040 Hb_007126_010 Hb_007126_010 Hb_000862_050--Hb_007126_010 Hb_008725_100--Hb_000592_100 Hb_008725_100--Hb_000098_270 Hb_008725_100--Hb_006120_130 Hb_000010_440 Hb_000010_440 Hb_008725_100--Hb_000010_440 Hb_008725_100--Hb_007126_010 Hb_089140_070 Hb_089140_070 Hb_177195_010--Hb_089140_070 Hb_177195_010--Hb_000098_270 Hb_000289_020 Hb_000289_020 Hb_177195_010--Hb_000289_020 Hb_177195_010--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_177195_010--Hb_002028_270 Hb_006120_130--Hb_000289_020 Hb_006120_130--Hb_000375_260 Hb_043552_010 Hb_043552_010 Hb_006120_130--Hb_043552_010 Hb_006120_130--Hb_002028_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0189425 0.254768 1.18974 1.14658 0.0425948 0.0220606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.227887 0.0961765

CAGE analysis