Hb_007126_010

Information

Type -
Description -
Location Contig7126: 12142-14941
Sequence    

Annotation

kegg
ID fve:101295381
description LRR receptor-like serine/threonine-protein kinase EFR-like
nr
ID XP_012071181.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID K7LFB5
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55379: 13477-13870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007126_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
2 Hb_006810_040 0.0985858905 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_001348_100 0.1016958201 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
4 Hb_000862_050 0.103198239 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
5 Hb_000592_100 0.1036217734 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
6 Hb_008725_100 0.1107171133 - - PREDICTED: histone H1-like [Jatropha curcas]
7 Hb_159809_040 0.110883882 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000098_270 0.1117799947 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
9 Hb_001971_040 0.1124105049 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
10 Hb_010672_010 0.1141334558 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
11 Hb_002028_270 0.1147362688 - - Pectinesterase-1 precursor, putative [Ricinus communis]
12 Hb_000345_230 0.1157523196 - - -
13 Hb_000375_260 0.1178993128 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
14 Hb_000522_160 0.1195235004 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_000020_050 0.1210952138 - - PREDICTED: expansin-A6 [Jatropha curcas]
16 Hb_000359_100 0.1234901066 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006693_010 0.1253015556 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
18 Hb_000431_100 0.1261233277 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
19 Hb_004005_060 0.1262065409 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
20 Hb_003935_040 0.1267721775 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]

Gene co-expression network

sample Hb_007126_010 Hb_007126_010 Hb_006810_040 Hb_006810_040 Hb_007126_010--Hb_006810_040 Hb_001348_100 Hb_001348_100 Hb_007126_010--Hb_001348_100 Hb_000862_050 Hb_000862_050 Hb_007126_010--Hb_000862_050 Hb_000592_100 Hb_000592_100 Hb_007126_010--Hb_000592_100 Hb_008725_100 Hb_008725_100 Hb_007126_010--Hb_008725_100 Hb_159809_040 Hb_159809_040 Hb_007126_010--Hb_159809_040 Hb_001971_040 Hb_001971_040 Hb_006810_040--Hb_001971_040 Hb_000522_160 Hb_000522_160 Hb_006810_040--Hb_000522_160 Hb_002028_270 Hb_002028_270 Hb_006810_040--Hb_002028_270 Hb_006810_040--Hb_159809_040 Hb_089140_070 Hb_089140_070 Hb_006810_040--Hb_089140_070 Hb_005332_030 Hb_005332_030 Hb_006810_040--Hb_005332_030 Hb_001348_100--Hb_000522_160 Hb_006693_010 Hb_006693_010 Hb_001348_100--Hb_006693_010 Hb_001348_100--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_001348_100--Hb_000538_290 Hb_001348_100--Hb_006810_040 Hb_000297_210 Hb_000297_210 Hb_001348_100--Hb_000297_210 Hb_000862_050--Hb_008725_100 Hb_000862_050--Hb_000592_100 Hb_004005_060 Hb_004005_060 Hb_000862_050--Hb_004005_060 Hb_006120_130 Hb_006120_130 Hb_000862_050--Hb_006120_130 Hb_000862_050--Hb_006810_040 Hb_000024_150 Hb_000024_150 Hb_000592_100--Hb_000024_150 Hb_000592_100--Hb_008725_100 Hb_024682_030 Hb_024682_030 Hb_000592_100--Hb_024682_030 Hb_000010_440 Hb_000010_440 Hb_000592_100--Hb_000010_440 Hb_010672_010 Hb_010672_010 Hb_000592_100--Hb_010672_010 Hb_000098_270 Hb_000098_270 Hb_008725_100--Hb_000098_270 Hb_008725_100--Hb_006120_130 Hb_008725_100--Hb_000010_440 Hb_159809_040--Hb_005332_030 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_159809_040--Hb_000522_160 Hb_000977_190 Hb_000977_190 Hb_159809_040--Hb_000977_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.144761 0.971799 1.03141 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0189788 0 0 0.20173 0.126778

CAGE analysis