Hb_000592_100

Information

Type -
Description -
Location Contig592: 140157-141281
Sequence    

Annotation

kegg
ID rcu:RCOM_0337100
description Protein P21, putative
nr
ID XP_012088543.1
description PREDICTED: thaumatin-like protein [Jatropha curcas]
swissprot
ID P50699
description Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2
trembl
ID A0A067JWI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27079 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50299: 140039-141267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_100 0.0 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
2 Hb_000024_150 0.0635818301 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
3 Hb_008725_100 0.0784187023 - - PREDICTED: histone H1-like [Jatropha curcas]
4 Hb_000862_050 0.085405206 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
5 Hb_024682_030 0.090510922 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
6 Hb_000010_440 0.1015053822 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
7 Hb_010672_010 0.1027794853 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
8 Hb_007126_010 0.1036217734 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
9 Hb_000152_590 0.1096602246 - - PREDICTED: 21 kDa protein [Jatropha curcas]
10 Hb_159809_040 0.1120992894 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000431_100 0.1135565162 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
12 Hb_001263_030 0.1153454693 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_001782_100 0.1158273715 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
14 Hb_004531_060 0.1168956113 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
15 Hb_003360_010 0.1196090201 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
16 Hb_006810_040 0.1243382582 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_000522_160 0.1256403608 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
18 Hb_005306_030 0.126628691 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
19 Hb_002817_030 0.1273351214 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
20 Hb_001348_100 0.1306499843 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]

Gene co-expression network

sample Hb_000592_100 Hb_000592_100 Hb_000024_150 Hb_000024_150 Hb_000592_100--Hb_000024_150 Hb_008725_100 Hb_008725_100 Hb_000592_100--Hb_008725_100 Hb_000862_050 Hb_000862_050 Hb_000592_100--Hb_000862_050 Hb_024682_030 Hb_024682_030 Hb_000592_100--Hb_024682_030 Hb_000010_440 Hb_000010_440 Hb_000592_100--Hb_000010_440 Hb_010672_010 Hb_010672_010 Hb_000592_100--Hb_010672_010 Hb_000024_150--Hb_000010_440 Hb_000024_150--Hb_024682_030 Hb_000941_010 Hb_000941_010 Hb_000024_150--Hb_000941_010 Hb_000365_430 Hb_000365_430 Hb_000024_150--Hb_000365_430 Hb_002817_030 Hb_002817_030 Hb_000024_150--Hb_002817_030 Hb_008725_100--Hb_000862_050 Hb_000098_270 Hb_000098_270 Hb_008725_100--Hb_000098_270 Hb_006120_130 Hb_006120_130 Hb_008725_100--Hb_006120_130 Hb_008725_100--Hb_000010_440 Hb_007126_010 Hb_007126_010 Hb_008725_100--Hb_007126_010 Hb_004005_060 Hb_004005_060 Hb_000862_050--Hb_004005_060 Hb_000862_050--Hb_006120_130 Hb_006810_040 Hb_006810_040 Hb_000862_050--Hb_006810_040 Hb_000862_050--Hb_007126_010 Hb_003360_010 Hb_003360_010 Hb_024682_030--Hb_003360_010 Hb_000431_100 Hb_000431_100 Hb_024682_030--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_024682_030--Hb_001524_120 Hb_001782_100 Hb_001782_100 Hb_024682_030--Hb_001782_100 Hb_000010_440--Hb_000365_430 Hb_001638_150 Hb_001638_150 Hb_000010_440--Hb_001638_150 Hb_000411_020 Hb_000411_020 Hb_000010_440--Hb_000411_020 Hb_000152_590 Hb_000152_590 Hb_010672_010--Hb_000152_590 Hb_146901_020 Hb_146901_020 Hb_010672_010--Hb_146901_020 Hb_010672_010--Hb_000098_270 Hb_010672_010--Hb_001782_100 Hb_020025_030 Hb_020025_030 Hb_010672_010--Hb_020025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301872 13.497 87.5104 70.7132 0.0494511 0.0498118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0565186 0 0 25.9585 12.1944

CAGE analysis