Hb_146901_020

Information

Type -
Description -
Location Contig146901: 19560-20217
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11906: 19611-20234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146901_020 0.0 - - -
2 Hb_000152_590 0.0979571325 - - PREDICTED: 21 kDa protein [Jatropha curcas]
3 Hb_027556_060 0.1011827266 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
4 Hb_010672_010 0.1019630299 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
5 Hb_013358_030 0.1059161691 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
6 Hb_003875_040 0.1152636101 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
7 Hb_003216_140 0.1214418828 - - F-box protein SNE, putative [Ricinus communis]
8 Hb_133508_020 0.1242361294 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
9 Hb_006916_120 0.1248367165 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
10 Hb_001776_070 0.1319440843 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
11 Hb_001247_090 0.13345983 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
12 Hb_004984_020 0.1337135749 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
13 Hb_000411_020 0.142882076 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001782_100 0.1442802143 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_000805_270 0.1461879096 - - PREDICTED: expansin-A4 [Gossypium raimondii]
16 Hb_000339_050 0.1485194805 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
17 Hb_000631_100 0.1486714618 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
18 Hb_001252_050 0.1493267208 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
19 Hb_000046_240 0.1513720427 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
20 Hb_000010_440 0.1518204703 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_146901_020 Hb_146901_020 Hb_000152_590 Hb_000152_590 Hb_146901_020--Hb_000152_590 Hb_027556_060 Hb_027556_060 Hb_146901_020--Hb_027556_060 Hb_010672_010 Hb_010672_010 Hb_146901_020--Hb_010672_010 Hb_013358_030 Hb_013358_030 Hb_146901_020--Hb_013358_030 Hb_003875_040 Hb_003875_040 Hb_146901_020--Hb_003875_040 Hb_003216_140 Hb_003216_140 Hb_146901_020--Hb_003216_140 Hb_000152_590--Hb_010672_010 Hb_001782_100 Hb_001782_100 Hb_000152_590--Hb_001782_100 Hb_133508_020 Hb_133508_020 Hb_000152_590--Hb_133508_020 Hb_006351_030 Hb_006351_030 Hb_000152_590--Hb_006351_030 Hb_006916_120 Hb_006916_120 Hb_000152_590--Hb_006916_120 Hb_001776_070 Hb_001776_070 Hb_027556_060--Hb_001776_070 Hb_027556_060--Hb_003216_140 Hb_027556_060--Hb_000152_590 Hb_001247_090 Hb_001247_090 Hb_027556_060--Hb_001247_090 Hb_000411_020 Hb_000411_020 Hb_027556_060--Hb_000411_020 Hb_000592_100 Hb_000592_100 Hb_010672_010--Hb_000592_100 Hb_000098_270 Hb_000098_270 Hb_010672_010--Hb_000098_270 Hb_010672_010--Hb_001782_100 Hb_020025_030 Hb_020025_030 Hb_010672_010--Hb_020025_030 Hb_013358_030--Hb_003875_040 Hb_013358_030--Hb_001776_070 Hb_008143_050 Hb_008143_050 Hb_013358_030--Hb_008143_050 Hb_000417_140 Hb_000417_140 Hb_013358_030--Hb_000417_140 Hb_001989_040 Hb_001989_040 Hb_013358_030--Hb_001989_040 Hb_000631_100 Hb_000631_100 Hb_003875_040--Hb_000631_100 Hb_003875_040--Hb_001776_070 Hb_005357_120 Hb_005357_120 Hb_003875_040--Hb_005357_120 Hb_003875_040--Hb_027556_060 Hb_189208_050 Hb_189208_050 Hb_003216_140--Hb_189208_050 Hb_003216_140--Hb_001247_090 Hb_024868_010 Hb_024868_010 Hb_003216_140--Hb_024868_010 Hb_003216_140--Hb_000411_020 Hb_003216_140--Hb_000631_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.25609 5.08319 6.95662 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.132277 0 3.57325 0.478302

CAGE analysis