Hb_003875_040

Information

Type -
Description -
Location Contig3875: 85463-90221
Sequence    

Annotation

kegg
ID rcu:RCOM_1117390
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_012080633.1
description PREDICTED: endoglucanase 11-like [Jatropha curcas]
swissprot
ID O48766
description Endoglucanase 11 OS=Arabidopsis thaliana GN=At2g32990 PE=2 SV=1
trembl
ID A0A067KEX7
description Endoglucanase OS=Jatropha curcas GN=JCGZ_13743 PE=3 SV=1
Gene Ontology
ID GO:0004553
description endoglucanase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38883: 85746-86454 , PASA_asmbl_38884: 87090-90045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003875_040 0.0 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
2 Hb_013358_030 0.0909558142 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
3 Hb_146901_020 0.1152636101 - - -
4 Hb_000631_100 0.1182653632 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
5 Hb_001776_070 0.1228791531 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
6 Hb_005357_120 0.1247147792 transcription factor TF Family: MYB-related -
7 Hb_027556_060 0.1259636098 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
8 Hb_000111_120 0.1290213371 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_006916_120 0.1293750556 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
10 Hb_005839_030 0.1300274422 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
11 Hb_024868_010 0.1306874578 - - protein kinase, putative [Ricinus communis]
12 Hb_009627_020 0.1310009114 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
13 Hb_010164_020 0.1347563941 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
14 Hb_001989_040 0.1374593116 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
15 Hb_003216_140 0.1395567632 - - F-box protein SNE, putative [Ricinus communis]
16 Hb_007044_220 0.1402151132 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
17 Hb_133508_020 0.1408535688 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
18 Hb_000411_020 0.1413992198 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000152_590 0.1419323621 - - PREDICTED: 21 kDa protein [Jatropha curcas]
20 Hb_000696_030 0.1437788801 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003875_040 Hb_003875_040 Hb_013358_030 Hb_013358_030 Hb_003875_040--Hb_013358_030 Hb_146901_020 Hb_146901_020 Hb_003875_040--Hb_146901_020 Hb_000631_100 Hb_000631_100 Hb_003875_040--Hb_000631_100 Hb_001776_070 Hb_001776_070 Hb_003875_040--Hb_001776_070 Hb_005357_120 Hb_005357_120 Hb_003875_040--Hb_005357_120 Hb_027556_060 Hb_027556_060 Hb_003875_040--Hb_027556_060 Hb_013358_030--Hb_146901_020 Hb_013358_030--Hb_001776_070 Hb_008143_050 Hb_008143_050 Hb_013358_030--Hb_008143_050 Hb_000417_140 Hb_000417_140 Hb_013358_030--Hb_000417_140 Hb_001989_040 Hb_001989_040 Hb_013358_030--Hb_001989_040 Hb_000152_590 Hb_000152_590 Hb_146901_020--Hb_000152_590 Hb_146901_020--Hb_027556_060 Hb_010672_010 Hb_010672_010 Hb_146901_020--Hb_010672_010 Hb_003216_140 Hb_003216_140 Hb_146901_020--Hb_003216_140 Hb_000411_020 Hb_000411_020 Hb_000631_100--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_000631_100--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_000631_100--Hb_024868_010 Hb_087427_010 Hb_087427_010 Hb_000631_100--Hb_087427_010 Hb_002641_140 Hb_002641_140 Hb_000631_100--Hb_002641_140 Hb_008021_040 Hb_008021_040 Hb_000631_100--Hb_008021_040 Hb_010164_020 Hb_010164_020 Hb_001776_070--Hb_010164_020 Hb_000696_030 Hb_000696_030 Hb_001776_070--Hb_000696_030 Hb_001776_070--Hb_027556_060 Hb_005679_110 Hb_005679_110 Hb_001776_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_001776_070--Hb_001349_020 Hb_005144_080 Hb_005144_080 Hb_001776_070--Hb_005144_080 Hb_005357_120--Hb_002641_140 Hb_005357_120--Hb_000411_020 Hb_005357_120--Hb_000631_100 Hb_004079_100 Hb_004079_100 Hb_005357_120--Hb_004079_100 Hb_001638_150 Hb_001638_150 Hb_005357_120--Hb_001638_150 Hb_005357_120--Hb_008021_040 Hb_027556_060--Hb_003216_140 Hb_027556_060--Hb_000152_590 Hb_001247_090 Hb_001247_090 Hb_027556_060--Hb_001247_090 Hb_027556_060--Hb_000411_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0994398 2.13263 5.37862 7.34802 0.0124399 0.109618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121015 0.0952072 0.0447654 4.01731 0.648067

CAGE analysis