Hb_005357_120

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5357: 110040-111184
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47553: 110790-111142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_120 0.0 transcription factor TF Family: MYB-related -
2 Hb_002641_140 0.086842241 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_000411_020 0.0985706282 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000631_100 0.1093761326 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
5 Hb_004079_100 0.1115414511 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
6 Hb_001638_150 0.1158960553 - - acyltransferase, putative [Ricinus communis]
7 Hb_008021_040 0.1167699974 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
8 Hb_000098_260 0.1224776507 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_003411_020 0.1233492424 - - alpha-glucosidase, putative [Ricinus communis]
10 Hb_000120_320 0.1240950313 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_003875_040 0.1247147792 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
12 Hb_003216_140 0.1256833291 - - F-box protein SNE, putative [Ricinus communis]
13 Hb_189208_050 0.1260191452 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
14 Hb_012787_060 0.1261631705 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
15 Hb_000645_160 0.1267157664 - - protein translocase, putative [Ricinus communis]
16 Hb_011129_020 0.1268420149 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
17 Hb_005679_120 0.1293764345 - - hypothetical protein RCOM_0284080 [Ricinus communis]
18 Hb_024868_010 0.1297509188 - - protein kinase, putative [Ricinus communis]
19 Hb_007625_030 0.1318265549 - - unknown [Medicago truncatula]
20 Hb_001048_070 0.1335591409 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]

Gene co-expression network

sample Hb_005357_120 Hb_005357_120 Hb_002641_140 Hb_002641_140 Hb_005357_120--Hb_002641_140 Hb_000411_020 Hb_000411_020 Hb_005357_120--Hb_000411_020 Hb_000631_100 Hb_000631_100 Hb_005357_120--Hb_000631_100 Hb_004079_100 Hb_004079_100 Hb_005357_120--Hb_004079_100 Hb_001638_150 Hb_001638_150 Hb_005357_120--Hb_001638_150 Hb_008021_040 Hb_008021_040 Hb_005357_120--Hb_008021_040 Hb_002641_140--Hb_008021_040 Hb_002641_140--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_002641_140--Hb_189208_050 Hb_000098_260 Hb_000098_260 Hb_002641_140--Hb_000098_260 Hb_012787_060 Hb_012787_060 Hb_002641_140--Hb_012787_060 Hb_000411_020--Hb_000631_100 Hb_000411_020--Hb_189208_050 Hb_000411_020--Hb_000098_260 Hb_003216_140 Hb_003216_140 Hb_000411_020--Hb_003216_140 Hb_000631_100--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_000631_100--Hb_024868_010 Hb_087427_010 Hb_087427_010 Hb_000631_100--Hb_087427_010 Hb_000631_100--Hb_002641_140 Hb_000631_100--Hb_008021_040 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_008566_080 Hb_008566_080 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_000594_160 Hb_000594_160 Hb_004079_100--Hb_000594_160 Hb_015001_030 Hb_015001_030 Hb_001638_150--Hb_015001_030 Hb_014250_010 Hb_014250_010 Hb_001638_150--Hb_014250_010 Hb_001440_010 Hb_001440_010 Hb_001638_150--Hb_001440_010 Hb_000010_440 Hb_000010_440 Hb_001638_150--Hb_000010_440 Hb_003092_020 Hb_003092_020 Hb_001638_150--Hb_003092_020 Hb_003656_090 Hb_003656_090 Hb_001638_150--Hb_003656_090 Hb_139461_010 Hb_139461_010 Hb_008021_040--Hb_139461_010 Hb_008021_040--Hb_189208_050 Hb_008021_040--Hb_024868_010 Hb_001048_070 Hb_001048_070 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.0864 13.8982 21.481 0.128527 0.335019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119161 0.37483 0 12.176 5.12407

CAGE analysis