Hb_000010_440

Information

Type -
Description -
Location Contig10: 485523-487558
Sequence    

Annotation

kegg
ID rcu:RCOM_1507440
description ubiquitin-protein ligase, putative
nr
ID XP_012079916.1
description PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID A0A067K427
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11357 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00197: 487282-487516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_440 0.0 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
2 Hb_000024_150 0.0832912788 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
3 Hb_000365_430 0.0932286895 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
4 Hb_000592_100 0.1015053822 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_001638_150 0.107689435 - - acyltransferase, putative [Ricinus communis]
6 Hb_008725_100 0.1086512587 - - PREDICTED: histone H1-like [Jatropha curcas]
7 Hb_000411_020 0.1106043782 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000098_260 0.120100146 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_024682_030 0.1205245743 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
10 Hb_003573_050 0.125154152 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_003747_250 0.1270328372 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
12 Hb_008806_040 0.1291052318 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
13 Hb_003092_020 0.1294634954 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
14 Hb_009189_100 0.1349082444 - - PREDICTED: patellin-6 [Jatropha curcas]
15 Hb_000152_590 0.1368791634 - - PREDICTED: 21 kDa protein [Jatropha curcas]
16 Hb_000862_050 0.1370284225 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
17 Hb_003992_020 0.1375988834 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
18 Hb_004117_280 0.1383366356 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
19 Hb_000329_720 0.1385646427 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
20 Hb_000631_100 0.1389734991 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000010_440 Hb_000010_440 Hb_000024_150 Hb_000024_150 Hb_000010_440--Hb_000024_150 Hb_000365_430 Hb_000365_430 Hb_000010_440--Hb_000365_430 Hb_000592_100 Hb_000592_100 Hb_000010_440--Hb_000592_100 Hb_001638_150 Hb_001638_150 Hb_000010_440--Hb_001638_150 Hb_008725_100 Hb_008725_100 Hb_000010_440--Hb_008725_100 Hb_000411_020 Hb_000411_020 Hb_000010_440--Hb_000411_020 Hb_000024_150--Hb_000592_100 Hb_024682_030 Hb_024682_030 Hb_000024_150--Hb_024682_030 Hb_000941_010 Hb_000941_010 Hb_000024_150--Hb_000941_010 Hb_000024_150--Hb_000365_430 Hb_002817_030 Hb_002817_030 Hb_000024_150--Hb_002817_030 Hb_003092_020 Hb_003092_020 Hb_000365_430--Hb_003092_020 Hb_009189_100 Hb_009189_100 Hb_000365_430--Hb_009189_100 Hb_001936_180 Hb_001936_180 Hb_000365_430--Hb_001936_180 Hb_007290_050 Hb_007290_050 Hb_000365_430--Hb_007290_050 Hb_000098_260 Hb_000098_260 Hb_000365_430--Hb_000098_260 Hb_000329_720 Hb_000329_720 Hb_000365_430--Hb_000329_720 Hb_000592_100--Hb_008725_100 Hb_000862_050 Hb_000862_050 Hb_000592_100--Hb_000862_050 Hb_000592_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_000592_100--Hb_010672_010 Hb_015001_030 Hb_015001_030 Hb_001638_150--Hb_015001_030 Hb_014250_010 Hb_014250_010 Hb_001638_150--Hb_014250_010 Hb_001440_010 Hb_001440_010 Hb_001638_150--Hb_001440_010 Hb_001638_150--Hb_003092_020 Hb_003656_090 Hb_003656_090 Hb_001638_150--Hb_003656_090 Hb_008725_100--Hb_000862_050 Hb_000098_270 Hb_000098_270 Hb_008725_100--Hb_000098_270 Hb_006120_130 Hb_006120_130 Hb_008725_100--Hb_006120_130 Hb_007126_010 Hb_007126_010 Hb_008725_100--Hb_007126_010 Hb_000631_100 Hb_000631_100 Hb_000411_020--Hb_000631_100 Hb_189208_050 Hb_189208_050 Hb_000411_020--Hb_189208_050 Hb_002641_140 Hb_002641_140 Hb_000411_020--Hb_002641_140 Hb_000411_020--Hb_000098_260 Hb_003216_140 Hb_003216_140 Hb_000411_020--Hb_003216_140 Hb_005357_120 Hb_005357_120 Hb_000411_020--Hb_005357_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220719 0.806958 2.71495 2.65902 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0397577 0 1.03919 0.650769

CAGE analysis