Hb_000977_190

Information

Type -
Description -
Location Contig977: 170347-170913
Sequence    

Annotation

kegg
ID rcu:RCOM_1076800
description hypothetical protein
nr
ID XP_002514779.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RM10
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1076800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002686_320 0.0660353293 - - syntaxin, putative [Ricinus communis]
3 Hb_005332_030 0.0801781727 - - conserved hypothetical protein [Ricinus communis]
4 Hb_159809_040 0.0902582883 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000538_290 0.0915372245 - - hypothetical protein RCOM_0303940 [Ricinus communis]
6 Hb_000140_200 0.0920539937 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
7 Hb_020025_030 0.0921508474 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
8 Hb_000701_020 0.0945894432 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
9 Hb_000187_050 0.0947479347 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
10 Hb_009113_020 0.0949987579 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
11 Hb_006810_040 0.095200927 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_006588_100 0.0954832948 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000522_160 0.1017038554 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
14 Hb_001263_030 0.1048390541 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
15 Hb_089140_070 0.1057704325 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
16 Hb_001971_040 0.1060778448 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
17 Hb_003656_080 0.1083426378 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
18 Hb_004055_090 0.10863551 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
19 Hb_009545_060 0.1089653258 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
20 Hb_001348_100 0.1180465414 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_190 Hb_000977_190 Hb_002686_320 Hb_002686_320 Hb_000977_190--Hb_002686_320 Hb_005332_030 Hb_005332_030 Hb_000977_190--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000977_190--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_000977_190--Hb_000538_290 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030 Hb_009113_020 Hb_009113_020 Hb_002686_320--Hb_009113_020 Hb_002686_320--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_002686_320--Hb_009545_060 Hb_000701_020 Hb_000701_020 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_005332_030--Hb_159809_040 Hb_000522_160 Hb_000522_160 Hb_005332_030--Hb_000522_160 Hb_003656_080 Hb_003656_080 Hb_005332_030--Hb_003656_080 Hb_006810_040 Hb_006810_040 Hb_005332_030--Hb_006810_040 Hb_001263_030 Hb_001263_030 Hb_005332_030--Hb_001263_030 Hb_159809_040--Hb_006810_040 Hb_000187_050 Hb_000187_050 Hb_159809_040--Hb_000187_050 Hb_000345_230 Hb_000345_230 Hb_159809_040--Hb_000345_230 Hb_159809_040--Hb_000522_160 Hb_000538_290--Hb_009113_020 Hb_000538_290--Hb_006810_040 Hb_000538_290--Hb_000701_020 Hb_000538_290--Hb_000187_050 Hb_000140_200--Hb_020025_030 Hb_000140_200--Hb_006588_100 Hb_000094_230 Hb_000094_230 Hb_000140_200--Hb_000094_230 Hb_000140_200--Hb_001263_030 Hb_000140_200--Hb_003656_080 Hb_020025_030--Hb_001263_030 Hb_020025_030--Hb_000094_230 Hb_004531_060 Hb_004531_060 Hb_020025_030--Hb_004531_060 Hb_020025_030--Hb_003656_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.13823 72.3588 78.8939 0.0444055 0.0745587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 16.1121 9.7734

CAGE analysis