Hb_000140_200

Information

Type -
Description -
Location Contig140: 164877-168740
Sequence    

Annotation

kegg
ID vvi:100265462
description uncharacterized LOC100265462
nr
ID XP_012083308.1
description PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14334 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10830: 165099-165525 , PASA_asmbl_10831: 165602-166220 , PASA_asmbl_10832: 166227-167112 , PASA_asmbl_10833: 167500-168681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_200 0.0 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
2 Hb_020025_030 0.0341719487 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
3 Hb_006588_100 0.0817135723 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000094_230 0.0847832692 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
5 Hb_001263_030 0.0866611255 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
6 Hb_003656_080 0.0900943153 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
7 Hb_000977_190 0.0920539937 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004531_060 0.099491354 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
9 Hb_005332_030 0.1031870834 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001052_020 0.1233955382 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
11 Hb_089140_070 0.1235233161 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
12 Hb_001950_090 0.124346213 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
13 Hb_002766_070 0.1257653558 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
14 Hb_000979_070 0.1265629405 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
15 Hb_002686_320 0.1265877222 - - syntaxin, putative [Ricinus communis]
16 Hb_185666_010 0.1279832874 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
17 Hb_000030_080 0.1284060048 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
18 Hb_000701_020 0.1309248968 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
19 Hb_002025_280 0.1313790689 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
20 Hb_001699_270 0.1329447176 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_200 Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000140_200--Hb_020025_030 Hb_006588_100 Hb_006588_100 Hb_000140_200--Hb_006588_100 Hb_000094_230 Hb_000094_230 Hb_000140_200--Hb_000094_230 Hb_001263_030 Hb_001263_030 Hb_000140_200--Hb_001263_030 Hb_003656_080 Hb_003656_080 Hb_000140_200--Hb_003656_080 Hb_000977_190 Hb_000977_190 Hb_000140_200--Hb_000977_190 Hb_020025_030--Hb_001263_030 Hb_020025_030--Hb_000094_230 Hb_004531_060 Hb_004531_060 Hb_020025_030--Hb_004531_060 Hb_020025_030--Hb_003656_080 Hb_020025_030--Hb_000977_190 Hb_000480_060 Hb_000480_060 Hb_006588_100--Hb_000480_060 Hb_006588_100--Hb_003656_080 Hb_001699_270 Hb_001699_270 Hb_006588_100--Hb_001699_270 Hb_001950_090 Hb_001950_090 Hb_006588_100--Hb_001950_090 Hb_000345_450 Hb_000345_450 Hb_006588_100--Hb_000345_450 Hb_000979_070 Hb_000979_070 Hb_000094_230--Hb_000979_070 Hb_000535_040 Hb_000535_040 Hb_000094_230--Hb_000535_040 Hb_000094_230--Hb_001263_030 Hb_000094_230--Hb_004531_060 Hb_000030_080 Hb_000030_080 Hb_001263_030--Hb_000030_080 Hb_001263_030--Hb_004531_060 Hb_005332_030 Hb_005332_030 Hb_001263_030--Hb_005332_030 Hb_001454_270 Hb_001454_270 Hb_001263_030--Hb_001454_270 Hb_003656_080--Hb_004531_060 Hb_003656_080--Hb_005332_030 Hb_003656_080--Hb_001950_090 Hb_002686_320 Hb_002686_320 Hb_000977_190--Hb_002686_320 Hb_000977_190--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000977_190--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_000977_190--Hb_000538_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.027242 1.58648 1.57718 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.469468 0.0778283

CAGE analysis