Hb_000979_070

Information

Type -
Description -
Location Contig979: 101429-105775
Sequence    

Annotation

kegg
ID rcu:RCOM_0628760
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_012072274.1
description PREDICTED: endoglucanase 8-like [Jatropha curcas]
swissprot
ID Q9CAC1
description Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1
trembl
ID A0A067KPL5
description Endoglucanase OS=Jatropha curcas GN=JCGZ_04735 PE=3 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64292: 101442-105800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_070 0.0 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
2 Hb_000094_230 0.0792539908 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
3 Hb_185666_010 0.1062124774 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
4 Hb_000535_040 0.1170084415 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
5 Hb_001862_160 0.1183535015 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
6 Hb_020025_030 0.1227643192 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
7 Hb_000140_200 0.1265629405 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
8 Hb_046615_040 0.1342860164 - - unnamed protein product [Vitis vinifera]
9 Hb_010812_130 0.1370380639 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
10 Hb_147060_010 0.1380005542 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
11 Hb_003010_050 0.1428413482 - - -
12 Hb_010672_010 0.1431766658 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
13 Hb_000272_010 0.143444168 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
14 Hb_151094_020 0.1442909445 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
15 Hb_001782_100 0.1445431731 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_000438_030 0.1472365333 - - -
17 Hb_002759_200 0.1487464233 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
18 Hb_000152_590 0.149521337 - - PREDICTED: 21 kDa protein [Jatropha curcas]
19 Hb_001269_120 0.150150255 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
20 Hb_000490_040 0.1507485091 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000979_070 Hb_000979_070 Hb_000094_230 Hb_000094_230 Hb_000979_070--Hb_000094_230 Hb_185666_010 Hb_185666_010 Hb_000979_070--Hb_185666_010 Hb_000535_040 Hb_000535_040 Hb_000979_070--Hb_000535_040 Hb_001862_160 Hb_001862_160 Hb_000979_070--Hb_001862_160 Hb_020025_030 Hb_020025_030 Hb_000979_070--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_000979_070--Hb_000140_200 Hb_000094_230--Hb_000535_040 Hb_000094_230--Hb_020025_030 Hb_000094_230--Hb_000140_200 Hb_001263_030 Hb_001263_030 Hb_000094_230--Hb_001263_030 Hb_004531_060 Hb_004531_060 Hb_000094_230--Hb_004531_060 Hb_015934_100 Hb_015934_100 Hb_185666_010--Hb_015934_100 Hb_185666_010--Hb_020025_030 Hb_008215_020 Hb_008215_020 Hb_185666_010--Hb_008215_020 Hb_000504_060 Hb_000504_060 Hb_185666_010--Hb_000504_060 Hb_185666_010--Hb_000094_230 Hb_000272_010 Hb_000272_010 Hb_000535_040--Hb_000272_010 Hb_008143_050 Hb_008143_050 Hb_000535_040--Hb_008143_050 Hb_001782_100 Hb_001782_100 Hb_000535_040--Hb_001782_100 Hb_000535_040--Hb_001263_030 Hb_004096_010 Hb_004096_010 Hb_001862_160--Hb_004096_010 Hb_001269_120 Hb_001269_120 Hb_001862_160--Hb_001269_120 Hb_151094_020 Hb_151094_020 Hb_001862_160--Hb_151094_020 Hb_000438_030 Hb_000438_030 Hb_001862_160--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_001862_160--Hb_147060_010 Hb_020025_030--Hb_000140_200 Hb_020025_030--Hb_001263_030 Hb_020025_030--Hb_004531_060 Hb_003656_080 Hb_003656_080 Hb_020025_030--Hb_003656_080 Hb_000977_190 Hb_000977_190 Hb_020025_030--Hb_000977_190 Hb_006588_100 Hb_006588_100 Hb_000140_200--Hb_006588_100 Hb_000140_200--Hb_001263_030 Hb_000140_200--Hb_003656_080 Hb_000140_200--Hb_000977_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147244 1.18477 23.1224 23.8746 0.123409 0.0366787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.045931 0 12.4573 0.385275

CAGE analysis