Hb_008215_020

Information

Type -
Description -
Location Contig8215: 28464-29338
Sequence    

Annotation

kegg
ID rcu:RCOM_1501410
description ankyrin repeat-containing protein, putative
nr
ID XP_002511002.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9X7
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1501410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59612: 28699-46587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008215_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_025163_020 0.0320378866 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
3 Hb_004531_060 0.1063111862 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
4 Hb_005701_100 0.1111189422 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
5 Hb_185666_010 0.1181396436 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
6 Hb_000069_650 0.1331519394 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005116_030 0.1335526248 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
8 Hb_003656_080 0.1364992416 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
9 Hb_003847_060 0.144246726 - - syntaxin, putative [Ricinus communis]
10 Hb_000890_140 0.1450733819 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
11 Hb_020025_030 0.1452074387 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
12 Hb_010775_020 0.1469510822 transcription factor TF Family: ERF Floral homeotic protein APETALA2, putative [Ricinus communis]
13 Hb_000397_170 0.1475328058 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000163_020 0.1478060442 - - -
15 Hb_000094_230 0.1504307678 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
16 Hb_010369_020 0.151246186 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
17 Hb_001950_090 0.1519403352 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
18 Hb_074674_010 0.1521766667 - - Cell division cycle protein cdt2, putative [Ricinus communis]
19 Hb_005306_060 0.15335204 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
20 Hb_000140_200 0.1538849738 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]

Gene co-expression network

sample Hb_008215_020 Hb_008215_020 Hb_025163_020 Hb_025163_020 Hb_008215_020--Hb_025163_020 Hb_004531_060 Hb_004531_060 Hb_008215_020--Hb_004531_060 Hb_005701_100 Hb_005701_100 Hb_008215_020--Hb_005701_100 Hb_185666_010 Hb_185666_010 Hb_008215_020--Hb_185666_010 Hb_000069_650 Hb_000069_650 Hb_008215_020--Hb_000069_650 Hb_005116_030 Hb_005116_030 Hb_008215_020--Hb_005116_030 Hb_025163_020--Hb_004531_060 Hb_025163_020--Hb_005701_100 Hb_000890_140 Hb_000890_140 Hb_025163_020--Hb_000890_140 Hb_025163_020--Hb_005116_030 Hb_000397_170 Hb_000397_170 Hb_025163_020--Hb_000397_170 Hb_001263_030 Hb_001263_030 Hb_004531_060--Hb_001263_030 Hb_003656_080 Hb_003656_080 Hb_004531_060--Hb_003656_080 Hb_020025_030 Hb_020025_030 Hb_004531_060--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_004531_060--Hb_000140_200 Hb_006588_100 Hb_006588_100 Hb_004531_060--Hb_006588_100 Hb_001950_090 Hb_001950_090 Hb_004531_060--Hb_001950_090 Hb_036602_010 Hb_036602_010 Hb_005701_100--Hb_036602_010 Hb_014549_010 Hb_014549_010 Hb_005701_100--Hb_014549_010 Hb_012092_040 Hb_012092_040 Hb_005701_100--Hb_012092_040 Hb_177195_010 Hb_177195_010 Hb_005701_100--Hb_177195_010 Hb_000979_070 Hb_000979_070 Hb_185666_010--Hb_000979_070 Hb_015934_100 Hb_015934_100 Hb_185666_010--Hb_015934_100 Hb_185666_010--Hb_020025_030 Hb_000504_060 Hb_000504_060 Hb_185666_010--Hb_000504_060 Hb_000094_230 Hb_000094_230 Hb_185666_010--Hb_000094_230 Hb_000069_650--Hb_001950_090 Hb_001377_370 Hb_001377_370 Hb_000069_650--Hb_001377_370 Hb_003847_060 Hb_003847_060 Hb_000069_650--Hb_003847_060 Hb_001390_040 Hb_001390_040 Hb_000069_650--Hb_001390_040 Hb_072201_010 Hb_072201_010 Hb_000069_650--Hb_072201_010 Hb_001565_090 Hb_001565_090 Hb_000069_650--Hb_001565_090 Hb_005116_030--Hb_000069_650 Hb_020301_020 Hb_020301_020 Hb_005116_030--Hb_020301_020 Hb_005116_030--Hb_072201_010 Hb_005116_030--Hb_001950_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.161209 2.11237 1.55224 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.406228 0

CAGE analysis