Hb_015934_100

Information

Type -
Description -
Location Contig15934: 66412-68207
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22390g
description POPTRDRAFT_559475; phospholipid/glycerol acyltransferase family protein
nr
ID XP_002306740.2
description phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
swissprot
ID Q9SHJ5
description Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1
trembl
ID B9H815
description Phospholipid/glycerol acyltransferase family protein OS=Populus trichocarpa GN=POPTR_0005s22390g PE=4 SV=2
Gene Ontology
ID GO:0004366
description glycerol-3-phosphate acyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14158: 67757-67929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015934_100 0.0 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
2 Hb_180695_010 0.0910190306 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
3 Hb_185666_010 0.1126904745 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
4 Hb_133508_020 0.1159481879 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
5 Hb_096878_010 0.125875259 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
6 Hb_185830_090 0.1309271953 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010672_010 0.1442391849 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
8 Hb_055147_020 0.1461553035 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
9 Hb_000152_590 0.1482794284 - - PREDICTED: 21 kDa protein [Jatropha curcas]
10 Hb_006916_120 0.1490210911 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
11 Hb_000635_190 0.1498684202 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
12 Hb_005916_040 0.1503454957 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
13 Hb_005701_100 0.1582327343 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
14 Hb_000172_310 0.1591601829 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
15 Hb_146901_020 0.1615120879 - - -
16 Hb_014549_010 0.1634016199 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
17 Hb_000098_270 0.1640057769 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
18 Hb_001416_170 0.164867914 - - kinase, putative [Ricinus communis]
19 Hb_000975_090 0.1672310207 - - Zeamatin precursor, putative [Ricinus communis]
20 Hb_000339_050 0.1679760511 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_015934_100 Hb_015934_100 Hb_180695_010 Hb_180695_010 Hb_015934_100--Hb_180695_010 Hb_185666_010 Hb_185666_010 Hb_015934_100--Hb_185666_010 Hb_133508_020 Hb_133508_020 Hb_015934_100--Hb_133508_020 Hb_096878_010 Hb_096878_010 Hb_015934_100--Hb_096878_010 Hb_185830_090 Hb_185830_090 Hb_015934_100--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_015934_100--Hb_010672_010 Hb_087314_010 Hb_087314_010 Hb_180695_010--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_180695_010--Hb_048987_020 Hb_005916_040 Hb_005916_040 Hb_180695_010--Hb_005916_040 Hb_107495_060 Hb_107495_060 Hb_180695_010--Hb_107495_060 Hb_033772_040 Hb_033772_040 Hb_180695_010--Hb_033772_040 Hb_000979_070 Hb_000979_070 Hb_185666_010--Hb_000979_070 Hb_020025_030 Hb_020025_030 Hb_185666_010--Hb_020025_030 Hb_008215_020 Hb_008215_020 Hb_185666_010--Hb_008215_020 Hb_000504_060 Hb_000504_060 Hb_185666_010--Hb_000504_060 Hb_000094_230 Hb_000094_230 Hb_185666_010--Hb_000094_230 Hb_006916_120 Hb_006916_120 Hb_133508_020--Hb_006916_120 Hb_000152_590 Hb_000152_590 Hb_133508_020--Hb_000152_590 Hb_000975_090 Hb_000975_090 Hb_133508_020--Hb_000975_090 Hb_133508_020--Hb_185830_090 Hb_133508_020--Hb_010672_010 Hb_133508_020--Hb_096878_010 Hb_000635_190 Hb_000635_190 Hb_096878_010--Hb_000635_190 Hb_096878_010--Hb_185830_090 Hb_006721_060 Hb_006721_060 Hb_096878_010--Hb_006721_060 Hb_000172_310 Hb_000172_310 Hb_096878_010--Hb_000172_310 Hb_003050_170 Hb_003050_170 Hb_096878_010--Hb_003050_170 Hb_185830_090--Hb_003050_170 Hb_185830_090--Hb_000635_190 Hb_004154_010 Hb_004154_010 Hb_185830_090--Hb_004154_010 Hb_185830_090--Hb_006721_060 Hb_010672_010--Hb_000152_590 Hb_146901_020 Hb_146901_020 Hb_010672_010--Hb_146901_020 Hb_000592_100 Hb_000592_100 Hb_010672_010--Hb_000592_100 Hb_000098_270 Hb_000098_270 Hb_010672_010--Hb_000098_270 Hb_001782_100 Hb_001782_100 Hb_010672_010--Hb_001782_100 Hb_010672_010--Hb_020025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.114884 0.472413 0.808342 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.225238 0

CAGE analysis