Hb_005916_040

Information

Type -
Description -
Location Contig5916: 30373-34043
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13470g
description POPTRDRAFT_649249; auxin influx carrier family protein
nr
ID XP_011046499.1
description PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
swissprot
ID Q8L883
description Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1
trembl
ID A9PAI6
description Auxin influx carrier family protein OS=Populus trichocarpa GN=POPTR_0009s13470g PE=2 SV=1
Gene Ontology
ID GO:0005886
description auxin transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50266: 31062-33927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005916_040 0.0 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
2 Hb_000086_510 0.1125456047 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
3 Hb_180695_010 0.1205397328 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
4 Hb_001025_100 0.1206299158 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
5 Hb_000157_020 0.1237895526 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000243_340 0.1296372517 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
7 Hb_002601_040 0.1317703554 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
8 Hb_165110_010 0.1323391302 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
9 Hb_085829_010 0.1331066053 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
10 Hb_000373_260 0.1351420172 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
11 Hb_000339_050 0.1373935297 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
12 Hb_000098_270 0.1442350841 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
13 Hb_005214_050 0.1447623797 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
14 Hb_002304_100 0.1449939705 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
15 Hb_001205_290 0.1457397478 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
16 Hb_006351_030 0.1483375741 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
17 Hb_015934_100 0.1503454957 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
18 Hb_000568_020 0.1541235307 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
19 Hb_043552_010 0.155591327 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
20 Hb_002641_090 0.1557269174 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]

Gene co-expression network

sample Hb_005916_040 Hb_005916_040 Hb_000086_510 Hb_000086_510 Hb_005916_040--Hb_000086_510 Hb_180695_010 Hb_180695_010 Hb_005916_040--Hb_180695_010 Hb_001025_100 Hb_001025_100 Hb_005916_040--Hb_001025_100 Hb_000157_020 Hb_000157_020 Hb_005916_040--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_005916_040--Hb_000243_340 Hb_002601_040 Hb_002601_040 Hb_005916_040--Hb_002601_040 Hb_085829_010 Hb_085829_010 Hb_000086_510--Hb_085829_010 Hb_000334_090 Hb_000334_090 Hb_000086_510--Hb_000334_090 Hb_165110_010 Hb_165110_010 Hb_000086_510--Hb_165110_010 Hb_000320_240 Hb_000320_240 Hb_000086_510--Hb_000320_240 Hb_000086_510--Hb_000157_020 Hb_000086_510--Hb_000243_340 Hb_015934_100 Hb_015934_100 Hb_180695_010--Hb_015934_100 Hb_087314_010 Hb_087314_010 Hb_180695_010--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_180695_010--Hb_048987_020 Hb_107495_060 Hb_107495_060 Hb_180695_010--Hb_107495_060 Hb_033772_040 Hb_033772_040 Hb_180695_010--Hb_033772_040 Hb_006351_030 Hb_006351_030 Hb_001025_100--Hb_006351_030 Hb_002304_100 Hb_002304_100 Hb_001025_100--Hb_002304_100 Hb_000339_050 Hb_000339_050 Hb_001025_100--Hb_000339_050 Hb_000805_270 Hb_000805_270 Hb_001025_100--Hb_000805_270 Hb_000162_190 Hb_000162_190 Hb_001025_100--Hb_000162_190 Hb_000506_050 Hb_000506_050 Hb_000157_020--Hb_000506_050 Hb_000890_120 Hb_000890_120 Hb_000157_020--Hb_000890_120 Hb_000157_020--Hb_000339_050 Hb_000157_020--Hb_165110_010 Hb_000157_020--Hb_085829_010 Hb_000243_340--Hb_002304_100 Hb_000243_340--Hb_002601_040 Hb_001645_030 Hb_001645_030 Hb_000243_340--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_000243_340--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_000243_340--Hb_000834_130 Hb_000243_340--Hb_000339_050 Hb_002601_040--Hb_002304_100 Hb_002601_040--Hb_000339_050 Hb_002601_040--Hb_001645_030 Hb_002601_040--Hb_000805_270 Hb_002601_040--Hb_000086_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.279531 1.3154 5.4173 14.3524 0.0228239 0.0120094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.23572 0.275049

CAGE analysis