Hb_000339_050

Information

Type -
Description -
Location Contig339: 130796-134980
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05750g
description POPTRDRAFT_800442; xanthine/uracil permease family protein
nr
ID XP_012091799.1
description PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
swissprot
ID Q94C70
description Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2
trembl
ID A0A067JEC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21584 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35426: 131648-132576 , PASA_asmbl_35427: 134788-135065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000339_050 0.0 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
2 Hb_000805_270 0.0482477729 - - PREDICTED: expansin-A4 [Gossypium raimondii]
3 Hb_004357_030 0.0842323118 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_000506_050 0.0920949518 - - PREDICTED: thymidine kinase [Jatropha curcas]
5 Hb_002304_100 0.0926827536 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
6 Hb_002601_040 0.0964932693 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
7 Hb_000157_020 0.098109048 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000243_340 0.0987712567 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
9 Hb_001247_090 0.1091536775 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
10 Hb_001025_100 0.1171096935 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
11 Hb_000152_590 0.117367489 - - PREDICTED: 21 kDa protein [Jatropha curcas]
12 Hb_010672_010 0.1227620582 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
13 Hb_165110_010 0.1247105026 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
14 Hb_001141_440 0.1251277979 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
15 Hb_000086_510 0.1252674393 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
16 Hb_000162_190 0.1256889825 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
17 Hb_000568_020 0.1257784897 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
18 Hb_003754_020 0.1310977276 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001616_100 0.1321573854 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
20 Hb_085829_010 0.1333938204 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000339_050 Hb_000339_050 Hb_000805_270 Hb_000805_270 Hb_000339_050--Hb_000805_270 Hb_004357_030 Hb_004357_030 Hb_000339_050--Hb_004357_030 Hb_000506_050 Hb_000506_050 Hb_000339_050--Hb_000506_050 Hb_002304_100 Hb_002304_100 Hb_000339_050--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000339_050--Hb_002601_040 Hb_000157_020 Hb_000157_020 Hb_000339_050--Hb_000157_020 Hb_000805_270--Hb_004357_030 Hb_000805_270--Hb_000506_050 Hb_000805_270--Hb_002304_100 Hb_000805_270--Hb_002601_040 Hb_000243_340 Hb_000243_340 Hb_000805_270--Hb_000243_340 Hb_003754_020 Hb_003754_020 Hb_004357_030--Hb_003754_020 Hb_004357_030--Hb_000506_050 Hb_000490_040 Hb_000490_040 Hb_004357_030--Hb_000490_040 Hb_002276_250 Hb_002276_250 Hb_004357_030--Hb_002276_250 Hb_000506_050--Hb_000157_020 Hb_165110_010 Hb_165110_010 Hb_000506_050--Hb_165110_010 Hb_000062_280 Hb_000062_280 Hb_000506_050--Hb_000062_280 Hb_002304_100--Hb_000243_340 Hb_001645_030 Hb_001645_030 Hb_002304_100--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_002304_100--Hb_000568_020 Hb_001247_090 Hb_001247_090 Hb_002304_100--Hb_001247_090 Hb_002304_100--Hb_002601_040 Hb_002601_040--Hb_000243_340 Hb_002601_040--Hb_001645_030 Hb_000086_510 Hb_000086_510 Hb_002601_040--Hb_000086_510 Hb_000890_120 Hb_000890_120 Hb_000157_020--Hb_000890_120 Hb_000157_020--Hb_000086_510 Hb_000157_020--Hb_165110_010 Hb_085829_010 Hb_085829_010 Hb_000157_020--Hb_085829_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408861 0.79945 5.89905 12.7802 0.00902736 0.018493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0327179 3.80597 0.911628

CAGE analysis