Hb_000805_270

Information

Type -
Description -
Location Contig805: 263244-265665
Sequence    

Annotation

kegg
ID mdm:103447439
description expansin-A4
nr
ID XP_012442392.1
description PREDICTED: expansin-A4 [Gossypium raimondii]
swissprot
ID O48818
description Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1
trembl
ID A0A0D2TMD6
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G098800 PE=4 SV=1
Gene Ontology
ID GO:0005576
description expansin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59000: 263338-265658
cDNA
(Sanger)
(ID:Location)		 015_A09.ab1: 263343-265031

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_270 0.0 - - PREDICTED: expansin-A4 [Gossypium raimondii]
2 Hb_000339_050 0.0482477729 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
3 Hb_004357_030 0.0721533647 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_000506_050 0.0955767958 - - PREDICTED: thymidine kinase [Jatropha curcas]
5 Hb_002304_100 0.0989287095 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
6 Hb_002601_040 0.1052503028 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
7 Hb_000243_340 0.1095351011 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_003754_020 0.1101261062 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001247_090 0.1157501356 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
10 Hb_002276_250 0.1157811628 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
11 Hb_001025_100 0.1172734967 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
12 Hb_027556_060 0.1173432761 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
13 Hb_000152_590 0.1189082694 - - PREDICTED: 21 kDa protein [Jatropha curcas]
14 Hb_000157_020 0.1195121824 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004055_090 0.1209596338 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
16 Hb_000162_190 0.1222912883 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
17 Hb_010672_010 0.1288754175 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
18 Hb_001616_100 0.1310080546 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
19 Hb_001782_100 0.1324123354 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
20 Hb_001141_440 0.1328723057 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_270 Hb_000805_270 Hb_000339_050 Hb_000339_050 Hb_000805_270--Hb_000339_050 Hb_004357_030 Hb_004357_030 Hb_000805_270--Hb_004357_030 Hb_000506_050 Hb_000506_050 Hb_000805_270--Hb_000506_050 Hb_002304_100 Hb_002304_100 Hb_000805_270--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000805_270--Hb_002601_040 Hb_000243_340 Hb_000243_340 Hb_000805_270--Hb_000243_340 Hb_000339_050--Hb_004357_030 Hb_000339_050--Hb_000506_050 Hb_000339_050--Hb_002304_100 Hb_000339_050--Hb_002601_040 Hb_000157_020 Hb_000157_020 Hb_000339_050--Hb_000157_020 Hb_003754_020 Hb_003754_020 Hb_004357_030--Hb_003754_020 Hb_004357_030--Hb_000506_050 Hb_000490_040 Hb_000490_040 Hb_004357_030--Hb_000490_040 Hb_002276_250 Hb_002276_250 Hb_004357_030--Hb_002276_250 Hb_000506_050--Hb_000157_020 Hb_165110_010 Hb_165110_010 Hb_000506_050--Hb_165110_010 Hb_000062_280 Hb_000062_280 Hb_000506_050--Hb_000062_280 Hb_002304_100--Hb_000243_340 Hb_001645_030 Hb_001645_030 Hb_002304_100--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_002304_100--Hb_000568_020 Hb_001247_090 Hb_001247_090 Hb_002304_100--Hb_001247_090 Hb_002304_100--Hb_002601_040 Hb_002601_040--Hb_000243_340 Hb_002601_040--Hb_001645_030 Hb_000086_510 Hb_000086_510 Hb_002601_040--Hb_000086_510 Hb_000243_340--Hb_001645_030 Hb_000243_340--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_000243_340--Hb_000834_130 Hb_000243_340--Hb_000339_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.963321 9.29518 76.2142 155.038 0.299799 0.446208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.300864 0.0887533 0.0552076 53.2817 14.8675

CAGE analysis