Hb_001025_100

Information

Type -
Description -
Location Contig1025: 92698-96122
Sequence    

Annotation

kegg
ID rcu:RCOM_1509600
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_012080008.1
description PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
swissprot
ID A2RVM0
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1
trembl
ID A0A067K4J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11433 PE=3 SV=1
Gene Ontology
ID GO:0016630
description short-chain dehydrogenase tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01085: 93894-95046 , PASA_asmbl_01086: 95347-96089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001025_100 0.0 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
2 Hb_006351_030 0.0709052624 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
3 Hb_002304_100 0.1139528319 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
4 Hb_000339_050 0.1171096935 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
5 Hb_000805_270 0.1172734967 - - PREDICTED: expansin-A4 [Gossypium raimondii]
6 Hb_005916_040 0.1206299158 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
7 Hb_000162_190 0.1217712724 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
8 Hb_000243_340 0.1222844568 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
9 Hb_074419_010 0.1241700375 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
10 Hb_001141_440 0.1242907828 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
11 Hb_000152_590 0.1260123144 - - PREDICTED: 21 kDa protein [Jatropha curcas]
12 Hb_001782_100 0.1275278468 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_000093_090 0.1325636443 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
14 Hb_000568_020 0.1326710211 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
15 Hb_001247_090 0.1327091507 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
16 Hb_002601_040 0.1331010107 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
17 Hb_006916_120 0.1345342323 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
18 Hb_000098_270 0.1346623272 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
19 Hb_085829_010 0.1384976788 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
20 Hb_030685_010 0.140718905 - - -

Gene co-expression network

sample Hb_001025_100 Hb_001025_100 Hb_006351_030 Hb_006351_030 Hb_001025_100--Hb_006351_030 Hb_002304_100 Hb_002304_100 Hb_001025_100--Hb_002304_100 Hb_000339_050 Hb_000339_050 Hb_001025_100--Hb_000339_050 Hb_000805_270 Hb_000805_270 Hb_001025_100--Hb_000805_270 Hb_005916_040 Hb_005916_040 Hb_001025_100--Hb_005916_040 Hb_000162_190 Hb_000162_190 Hb_001025_100--Hb_000162_190 Hb_001782_100 Hb_001782_100 Hb_006351_030--Hb_001782_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_000152_590 Hb_000152_590 Hb_006351_030--Hb_000152_590 Hb_000878_120 Hb_000878_120 Hb_006351_030--Hb_000878_120 Hb_006916_120 Hb_006916_120 Hb_006351_030--Hb_006916_120 Hb_000243_340 Hb_000243_340 Hb_002304_100--Hb_000243_340 Hb_001645_030 Hb_001645_030 Hb_002304_100--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_002304_100--Hb_000568_020 Hb_001247_090 Hb_001247_090 Hb_002304_100--Hb_001247_090 Hb_002304_100--Hb_000339_050 Hb_002601_040 Hb_002601_040 Hb_002304_100--Hb_002601_040 Hb_000339_050--Hb_000805_270 Hb_004357_030 Hb_004357_030 Hb_000339_050--Hb_004357_030 Hb_000506_050 Hb_000506_050 Hb_000339_050--Hb_000506_050 Hb_000339_050--Hb_002601_040 Hb_000157_020 Hb_000157_020 Hb_000339_050--Hb_000157_020 Hb_000805_270--Hb_004357_030 Hb_000805_270--Hb_000506_050 Hb_000805_270--Hb_002304_100 Hb_000805_270--Hb_002601_040 Hb_000805_270--Hb_000243_340 Hb_000086_510 Hb_000086_510 Hb_005916_040--Hb_000086_510 Hb_180695_010 Hb_180695_010 Hb_005916_040--Hb_180695_010 Hb_005916_040--Hb_000157_020 Hb_005916_040--Hb_000243_340 Hb_005916_040--Hb_002601_040 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_025787_020 Hb_025787_020 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445456 1.98046 8.69332 17.526 0.379514 0.124422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.16108 1.3236

CAGE analysis