Hb_006721_060

Information

Type -
Description -
Location Contig6721: 88565-89005
Sequence    

Annotation

kegg
ID mdm:13630214
description rnaseH, C3258_p14; rnaseH
nr
ID YP_006666138.1
description RnaseH (mitochondrion) [Malus domestica]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID J9JES3
description RnaseH protein OS=Malus domestica GN=rnaseH PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006721_060 0.0 - - RnaseH (mitochondrion) [Malus domestica]
2 Hb_000635_190 0.0419062724 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
3 Hb_096878_010 0.0727617848 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
4 Hb_004096_140 0.0889269369 - - Lipase, putative [Ricinus communis]
5 Hb_003050_170 0.0962666277 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000172_310 0.1109410796 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
7 Hb_000060_080 0.1146891868 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
8 Hb_185830_090 0.1175689574 - - conserved hypothetical protein [Ricinus communis]
9 Hb_014549_010 0.1187259359 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
10 Hb_170632_010 0.1192584888 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_087314_010 0.1272374085 - - -
12 Hb_003968_010 0.1313804513 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000975_090 0.1384949006 - - Zeamatin precursor, putative [Ricinus communis]
14 Hb_003712_010 0.1445045585 - - protein binding protein, putative [Ricinus communis]
15 Hb_004154_010 0.1447666683 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
16 Hb_036602_010 0.151421108 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
17 Hb_005217_070 0.1558650994 - - conserved hypothetical protein [Ricinus communis]
18 Hb_133508_020 0.1621377957 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
19 Hb_004218_220 0.1627806604 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_002035_020 0.1639272764 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]

Gene co-expression network

sample Hb_006721_060 Hb_006721_060 Hb_000635_190 Hb_000635_190 Hb_006721_060--Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_006721_060--Hb_096878_010 Hb_004096_140 Hb_004096_140 Hb_006721_060--Hb_004096_140 Hb_003050_170 Hb_003050_170 Hb_006721_060--Hb_003050_170 Hb_000172_310 Hb_000172_310 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_000635_190--Hb_096878_010 Hb_000635_190--Hb_003050_170 Hb_185830_090 Hb_185830_090 Hb_000635_190--Hb_185830_090 Hb_000635_190--Hb_000172_310 Hb_000635_190--Hb_004096_140 Hb_096878_010--Hb_185830_090 Hb_096878_010--Hb_000172_310 Hb_096878_010--Hb_003050_170 Hb_133508_020 Hb_133508_020 Hb_096878_010--Hb_133508_020 Hb_001019_140 Hb_001019_140 Hb_004096_140--Hb_001019_140 Hb_048937_010 Hb_048937_010 Hb_004096_140--Hb_048937_010 Hb_003968_010 Hb_003968_010 Hb_004096_140--Hb_003968_010 Hb_138705_010 Hb_138705_010 Hb_004096_140--Hb_138705_010 Hb_004096_140--Hb_000060_080 Hb_003050_170--Hb_185830_090 Hb_008725_030 Hb_008725_030 Hb_003050_170--Hb_008725_030 Hb_003050_170--Hb_003968_010 Hb_004218_220 Hb_004218_220 Hb_000172_310--Hb_004218_220 Hb_055147_020 Hb_055147_020 Hb_000172_310--Hb_055147_020 Hb_000172_310--Hb_004096_140 Hb_170632_010 Hb_170632_010 Hb_000060_080--Hb_170632_010 Hb_002676_110 Hb_002676_110 Hb_000060_080--Hb_002676_110 Hb_001663_090 Hb_001663_090 Hb_000060_080--Hb_001663_090 Hb_001562_030 Hb_001562_030 Hb_000060_080--Hb_001562_030 Hb_004631_100 Hb_004631_100 Hb_000060_080--Hb_004631_100 Hb_000975_090 Hb_000975_090 Hb_000060_080--Hb_000975_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.148214 0.219507 0.328383 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0551025 0

CAGE analysis