Hb_004096_010

Information

Type transcription factor
Description TF Family: LOB
Location Contig4096: 5587-7068
Sequence    

Annotation

kegg
ID cit:102613469
description LOB domain-containing protein 41-like
nr
ID XP_012077976.1
description PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
swissprot
ID Q9M886
description LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1
trembl
ID A0A067KMA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40413: 5772-6922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_010 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
2 Hb_010598_010 0.1074386192 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
3 Hb_072997_010 0.1116089314 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
4 Hb_001862_160 0.1184045414 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
5 Hb_001269_120 0.122228076 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
6 Hb_055440_010 0.1224574326 - - protein binding protein, putative [Ricinus communis]
7 Hb_009767_030 0.1347919918 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
8 Hb_013358_030 0.1430910113 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
9 Hb_001288_020 0.1445392724 - - -
10 Hb_001005_170 0.1479224488 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
11 Hb_001002_090 0.1540498759 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
12 Hb_001158_110 0.1571668599 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
13 Hb_001416_170 0.1572364738 - - kinase, putative [Ricinus communis]
14 Hb_000979_070 0.1583437306 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
15 Hb_000417_140 0.1660676815 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
16 Hb_146901_020 0.1695875113 - - -
17 Hb_000086_720 0.1701044892 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
18 Hb_004984_020 0.1712729501 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
19 Hb_001776_070 0.1728600098 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
20 Hb_001252_050 0.1773225696 - - Wall-associated receptor kinase-like 20 [Morus notabilis]

Gene co-expression network

sample Hb_004096_010 Hb_004096_010 Hb_010598_010 Hb_010598_010 Hb_004096_010--Hb_010598_010 Hb_072997_010 Hb_072997_010 Hb_004096_010--Hb_072997_010 Hb_001862_160 Hb_001862_160 Hb_004096_010--Hb_001862_160 Hb_001269_120 Hb_001269_120 Hb_004096_010--Hb_001269_120 Hb_055440_010 Hb_055440_010 Hb_004096_010--Hb_055440_010 Hb_009767_030 Hb_009767_030 Hb_004096_010--Hb_009767_030 Hb_010598_010--Hb_072997_010 Hb_009070_030 Hb_009070_030 Hb_010598_010--Hb_009070_030 Hb_010598_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_010598_010--Hb_001002_090 Hb_001288_020 Hb_001288_020 Hb_010598_010--Hb_001288_020 Hb_072997_010--Hb_055440_010 Hb_072997_010--Hb_001002_090 Hb_072997_010--Hb_009767_030 Hb_072997_010--Hb_001288_020 Hb_000979_070 Hb_000979_070 Hb_001862_160--Hb_000979_070 Hb_001862_160--Hb_001269_120 Hb_151094_020 Hb_151094_020 Hb_001862_160--Hb_151094_020 Hb_000438_030 Hb_000438_030 Hb_001862_160--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_001862_160--Hb_147060_010 Hb_001269_120--Hb_000979_070 Hb_001269_120--Hb_055440_010 Hb_001269_120--Hb_072997_010 Hb_009535_010 Hb_009535_010 Hb_001269_120--Hb_009535_010 Hb_055440_010--Hb_001002_090 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_000979_080 Hb_000979_080 Hb_055440_010--Hb_000979_080 Hb_000696_250 Hb_000696_250 Hb_009767_030--Hb_000696_250 Hb_001252_050 Hb_001252_050 Hb_009767_030--Hb_001252_050 Hb_009767_030--Hb_001002_090 Hb_001776_070 Hb_001776_070 Hb_009767_030--Hb_001776_070 Hb_021888_010 Hb_021888_010 Hb_009767_030--Hb_021888_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.346953 5.93065 31.4309 24.3163 0.0869348 0.135994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.493751 0.102675 24.1547 0.114288

CAGE analysis