Hb_009070_030

Information

Type -
Description -
Location Contig9070: 20797-29289
Sequence    

Annotation

kegg
ID rcu:RCOM_0706730
description hypothetical protein
nr
ID XP_012077218.1
description PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID A0A067KQE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07615 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62072: 21687-24584 , PASA_asmbl_62073: 23500-24584 , PASA_asmbl_62074: 25475-26798 , PASA_asmbl_62075: 24614-26798 , PASA_asmbl_62076: 26814-27569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009070_030 0.0 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
2 Hb_042083_060 0.1103485489 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
3 Hb_008554_090 0.1201800688 - - zinc finger protein, putative [Ricinus communis]
4 Hb_002110_060 0.1202379405 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
5 Hb_010598_010 0.1297396018 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
6 Hb_001002_090 0.1305911424 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
7 Hb_055440_010 0.1311307814 - - protein binding protein, putative [Ricinus communis]
8 Hb_001454_290 0.1432606395 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
9 Hb_001288_020 0.1460883719 - - -
10 Hb_021888_010 0.1521734276 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
11 Hb_072997_010 0.1529133371 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
12 Hb_004525_110 0.1538836251 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
13 Hb_005730_070 0.1593990333 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
14 Hb_010164_020 0.160351808 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
15 Hb_001532_060 0.1611298471 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
16 Hb_009767_030 0.1626641438 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
17 Hb_003413_020 0.1644357474 - - -
18 Hb_000086_720 0.1647608032 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_004703_010 0.1734430649 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_000022_280 0.1754569879 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]

Gene co-expression network

sample Hb_009070_030 Hb_009070_030 Hb_042083_060 Hb_042083_060 Hb_009070_030--Hb_042083_060 Hb_008554_090 Hb_008554_090 Hb_009070_030--Hb_008554_090 Hb_002110_060 Hb_002110_060 Hb_009070_030--Hb_002110_060 Hb_010598_010 Hb_010598_010 Hb_009070_030--Hb_010598_010 Hb_001002_090 Hb_001002_090 Hb_009070_030--Hb_001002_090 Hb_055440_010 Hb_055440_010 Hb_009070_030--Hb_055440_010 Hb_042083_060--Hb_008554_090 Hb_042083_060--Hb_010598_010 Hb_042083_060--Hb_002110_060 Hb_004525_110 Hb_004525_110 Hb_042083_060--Hb_004525_110 Hb_001454_290 Hb_001454_290 Hb_042083_060--Hb_001454_290 Hb_008554_090--Hb_002110_060 Hb_005730_070 Hb_005730_070 Hb_008554_090--Hb_005730_070 Hb_008554_090--Hb_004525_110 Hb_150730_010 Hb_150730_010 Hb_008554_090--Hb_150730_010 Hb_162286_030 Hb_162286_030 Hb_002110_060--Hb_162286_030 Hb_000009_130 Hb_000009_130 Hb_002110_060--Hb_000009_130 Hb_002110_060--Hb_005730_070 Hb_002110_060--Hb_001454_290 Hb_004096_010 Hb_004096_010 Hb_010598_010--Hb_004096_010 Hb_072997_010 Hb_072997_010 Hb_010598_010--Hb_072997_010 Hb_010598_010--Hb_055440_010 Hb_010598_010--Hb_001002_090 Hb_001288_020 Hb_001288_020 Hb_010598_010--Hb_001288_020 Hb_001002_090--Hb_055440_010 Hb_000979_080 Hb_000979_080 Hb_001002_090--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_001002_090--Hb_000187_110 Hb_001002_090--Hb_072997_010 Hb_009767_030 Hb_009767_030 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070 Hb_055440_010--Hb_072997_010 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_055440_010--Hb_004096_010 Hb_055440_010--Hb_000979_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0549705 1.1999 2.6355 1.76939 0.0767134 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0456851 0.0119834 0.0229054 3.48011 0.102184

CAGE analysis