Hb_002110_060

Information

Type -
Description -
Location Contig2110: 77524-78990
Sequence    

Annotation

kegg
ID rcu:RCOM_1038730
description protein with unknown function
nr
ID XP_012067958.1
description PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
swissprot
ID Q9SGN7
description Serine/threonine-protein kinase-like protein At1g28390 OS=Arabidopsis thaliana GN=At1g28390 PE=2 SV=1
trembl
ID A0A067L2I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15860 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein at1g28390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_060 0.0 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
2 Hb_008554_090 0.0885334411 - - zinc finger protein, putative [Ricinus communis]
3 Hb_009070_030 0.1202379405 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
4 Hb_162286_030 0.1221554902 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
5 Hb_000009_130 0.1233611667 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
6 Hb_005730_070 0.1249132713 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
7 Hb_001454_290 0.128264052 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
8 Hb_150730_010 0.1288299861 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_004129_110 0.1292069391 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
10 Hb_166009_010 0.1292208778 - - carbonyl reductase, putative [Ricinus communis]
11 Hb_001723_070 0.130220575 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
12 Hb_009778_050 0.1336224323 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
13 Hb_000022_280 0.1369838503 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
14 Hb_001832_240 0.1375026107 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
15 Hb_011472_020 0.1417241861 - - PREDICTED: mucin-17-like [Jatropha curcas]
16 Hb_000723_050 0.1424584267 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
17 Hb_010174_170 0.1435295042 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
18 Hb_000227_370 0.145107453 - - sugar transporter, putative [Ricinus communis]
19 Hb_004703_010 0.1456799061 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_042083_060 0.1521086389 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_060 Hb_002110_060 Hb_008554_090 Hb_008554_090 Hb_002110_060--Hb_008554_090 Hb_009070_030 Hb_009070_030 Hb_002110_060--Hb_009070_030 Hb_162286_030 Hb_162286_030 Hb_002110_060--Hb_162286_030 Hb_000009_130 Hb_000009_130 Hb_002110_060--Hb_000009_130 Hb_005730_070 Hb_005730_070 Hb_002110_060--Hb_005730_070 Hb_001454_290 Hb_001454_290 Hb_002110_060--Hb_001454_290 Hb_008554_090--Hb_005730_070 Hb_008554_090--Hb_009070_030 Hb_004525_110 Hb_004525_110 Hb_008554_090--Hb_004525_110 Hb_150730_010 Hb_150730_010 Hb_008554_090--Hb_150730_010 Hb_042083_060 Hb_042083_060 Hb_008554_090--Hb_042083_060 Hb_009070_030--Hb_042083_060 Hb_010598_010 Hb_010598_010 Hb_009070_030--Hb_010598_010 Hb_001002_090 Hb_001002_090 Hb_009070_030--Hb_001002_090 Hb_055440_010 Hb_055440_010 Hb_009070_030--Hb_055440_010 Hb_001723_070 Hb_001723_070 Hb_162286_030--Hb_001723_070 Hb_001621_020 Hb_001621_020 Hb_162286_030--Hb_001621_020 Hb_162286_030--Hb_000009_130 Hb_010174_170 Hb_010174_170 Hb_162286_030--Hb_010174_170 Hb_008215_010 Hb_008215_010 Hb_162286_030--Hb_008215_010 Hb_166009_010 Hb_166009_010 Hb_000009_130--Hb_166009_010 Hb_004129_110 Hb_004129_110 Hb_000009_130--Hb_004129_110 Hb_011472_020 Hb_011472_020 Hb_000009_130--Hb_011472_020 Hb_010519_020 Hb_010519_020 Hb_000009_130--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_000009_130--Hb_001421_010 Hb_000022_280 Hb_000022_280 Hb_000009_130--Hb_000022_280 Hb_001349_020 Hb_001349_020 Hb_005730_070--Hb_001349_020 Hb_000057_180 Hb_000057_180 Hb_005730_070--Hb_000057_180 Hb_000017_320 Hb_000017_320 Hb_005730_070--Hb_000017_320 Hb_002304_190 Hb_002304_190 Hb_005730_070--Hb_002304_190 Hb_002003_010 Hb_002003_010 Hb_005730_070--Hb_002003_010 Hb_002871_050 Hb_002871_050 Hb_001454_290--Hb_002871_050 Hb_005679_110 Hb_005679_110 Hb_001454_290--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001454_290--Hb_001345_020 Hb_001454_290--Hb_005730_070 Hb_000723_050 Hb_000723_050 Hb_001454_290--Hb_000723_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0524589 2.87196 4.22183 2.41173 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0320405 0 0.0473176 6.49172 0.526843

CAGE analysis