Hb_000017_320

Information

Type transcription factor
Description TF Family: bHLH
Location Contig17: 429113-432636
Sequence    

Annotation

kegg
ID tcc:TCM_016261
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012086893.1
description PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FN69
description Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1
trembl
ID A0A067JN60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20587 PE=4 SV=1
Gene Ontology
ID GO:0046983
description basic helix-loop-helix dna-binding superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15846: 428654-429155 , PASA_asmbl_15847: 429183-429439 , PASA_asmbl_15848: 431541-432643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_320 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
2 Hb_002003_010 0.0658239332 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
3 Hb_001349_020 0.0909100548 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
4 Hb_002304_190 0.0957218776 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
5 Hb_005766_010 0.0992463536 - - serine carboxypeptidase, putative [Ricinus communis]
6 Hb_005730_070 0.1078970152 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
7 Hb_002685_100 0.1111478018 - - low temperature inducible SLTI66 [Glycine max]
8 Hb_000594_160 0.1130735631 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
9 Hb_000203_080 0.1155685085 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
10 Hb_033312_050 0.1195446186 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
11 Hb_001114_120 0.1218217398 - - protein with unknown function [Ricinus communis]
12 Hb_001832_110 0.1227607979 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
13 Hb_000834_210 0.1230126806 - - unnamed protein product [Vitis vinifera]
14 Hb_001040_200 0.125424004 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
15 Hb_000096_210 0.1266543731 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
16 Hb_009150_060 0.1281906673 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
17 Hb_000836_260 0.1284993299 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_002475_030 0.1288264278 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000696_250 0.1292802169 - - PREDICTED: patellin-6 [Jatropha curcas]
20 Hb_001345_020 0.1315275387 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]

Gene co-expression network

sample Hb_000017_320 Hb_000017_320 Hb_002003_010 Hb_002003_010 Hb_000017_320--Hb_002003_010 Hb_001349_020 Hb_001349_020 Hb_000017_320--Hb_001349_020 Hb_002304_190 Hb_002304_190 Hb_000017_320--Hb_002304_190 Hb_005766_010 Hb_005766_010 Hb_000017_320--Hb_005766_010 Hb_005730_070 Hb_005730_070 Hb_000017_320--Hb_005730_070 Hb_002685_100 Hb_002685_100 Hb_000017_320--Hb_002685_100 Hb_000834_210 Hb_000834_210 Hb_002003_010--Hb_000834_210 Hb_002003_010--Hb_001349_020 Hb_003160_050 Hb_003160_050 Hb_002003_010--Hb_003160_050 Hb_002003_010--Hb_005730_070 Hb_001114_120 Hb_001114_120 Hb_002003_010--Hb_001114_120 Hb_005679_110 Hb_005679_110 Hb_001349_020--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001349_020--Hb_001345_020 Hb_001349_020--Hb_005730_070 Hb_000696_250 Hb_000696_250 Hb_001349_020--Hb_000696_250 Hb_002304_190--Hb_002685_100 Hb_001832_110 Hb_001832_110 Hb_002304_190--Hb_001832_110 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_000336_280 Hb_000336_280 Hb_002304_190--Hb_000336_280 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120 Hb_000594_160 Hb_000594_160 Hb_005766_010--Hb_000594_160 Hb_014250_010 Hb_014250_010 Hb_005766_010--Hb_014250_010 Hb_000866_190 Hb_000866_190 Hb_005766_010--Hb_000866_190 Hb_000096_210 Hb_000096_210 Hb_005766_010--Hb_000096_210 Hb_005731_070 Hb_005731_070 Hb_005766_010--Hb_005731_070 Hb_008554_090 Hb_008554_090 Hb_005730_070--Hb_008554_090 Hb_000057_180 Hb_000057_180 Hb_005730_070--Hb_000057_180 Hb_005730_070--Hb_002304_190 Hb_002685_100--Hb_000336_280 Hb_002685_100--Hb_001832_110 Hb_001358_120 Hb_001358_120 Hb_002685_100--Hb_001358_120 Hb_005333_210 Hb_005333_210 Hb_002685_100--Hb_005333_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278206 3.25834 8.31883 7.5838 0.00701037 0.0336837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0169968 0.0267494 0 14.1028 4.26781

CAGE analysis