Hb_005333_210

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5333: 195548-196740
Sequence    

Annotation

kegg
ID pxb:103936583
description transcription factor bHLH30-like
nr
ID XP_012067990.1
description PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
swissprot
ID Q9S7Y1
description Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1
trembl
ID A0A067L2K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15880 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_210 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
2 Hb_000336_280 0.0880859714 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
3 Hb_001300_140 0.1011318069 - - -
4 Hb_079394_010 0.1093177962 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_000215_130 0.1130067219 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
6 Hb_000753_180 0.114460943 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
7 Hb_001004_130 0.114481346 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
8 Hb_002685_100 0.1167482854 - - low temperature inducible SLTI66 [Glycine max]
9 Hb_011440_010 0.1169076476 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
10 Hb_000844_090 0.11718201 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
11 Hb_000836_260 0.1216428931 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_001226_100 0.1221672841 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_008376_020 0.1243928393 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
14 Hb_001832_110 0.1244086942 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
15 Hb_009296_060 0.1333325092 - - glutathione s-transferase, putative [Ricinus communis]
16 Hb_001358_120 0.1336923289 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
17 Hb_123560_020 0.1360942105 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
18 Hb_002379_060 0.1385690006 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
19 Hb_001366_050 0.1394825345 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
20 Hb_000847_120 0.1411869778 - - hypothetical protein JCGZ_15115 [Jatropha curcas]

Gene co-expression network

sample Hb_005333_210 Hb_005333_210 Hb_000336_280 Hb_000336_280 Hb_005333_210--Hb_000336_280 Hb_001300_140 Hb_001300_140 Hb_005333_210--Hb_001300_140 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_000215_130 Hb_000215_130 Hb_005333_210--Hb_000215_130 Hb_000753_180 Hb_000753_180 Hb_005333_210--Hb_000753_180 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130 Hb_001832_110 Hb_001832_110 Hb_000336_280--Hb_001832_110 Hb_002685_100 Hb_002685_100 Hb_000336_280--Hb_002685_100 Hb_001226_100 Hb_001226_100 Hb_000336_280--Hb_001226_100 Hb_000336_280--Hb_000215_130 Hb_002304_190 Hb_002304_190 Hb_000336_280--Hb_002304_190 Hb_011440_010 Hb_011440_010 Hb_001300_140--Hb_011440_010 Hb_009150_060 Hb_009150_060 Hb_001300_140--Hb_009150_060 Hb_000836_260 Hb_000836_260 Hb_001300_140--Hb_000836_260 Hb_001300_140--Hb_000753_180 Hb_000844_090 Hb_000844_090 Hb_001300_140--Hb_000844_090 Hb_079394_010--Hb_001004_130 Hb_008376_020 Hb_008376_020 Hb_079394_010--Hb_008376_020 Hb_004519_010 Hb_004519_010 Hb_079394_010--Hb_004519_010 Hb_000832_250 Hb_000832_250 Hb_079394_010--Hb_000832_250 Hb_004709_030 Hb_004709_030 Hb_079394_010--Hb_004709_030 Hb_001186_120 Hb_001186_120 Hb_000215_130--Hb_001186_120 Hb_000215_130--Hb_001226_100 Hb_000215_130--Hb_004709_030 Hb_000215_130--Hb_001832_110 Hb_006916_020 Hb_006916_020 Hb_000753_180--Hb_006916_020 Hb_000753_180--Hb_011440_010 Hb_000753_180--Hb_000836_260 Hb_000753_180--Hb_009150_060 Hb_001004_130--Hb_000844_090 Hb_001004_130--Hb_008376_020 Hb_006573_250 Hb_006573_250 Hb_001004_130--Hb_006573_250 Hb_001005_210 Hb_001005_210 Hb_001004_130--Hb_001005_210 Hb_001004_130--Hb_001300_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0203056 0.67681 6.05565 2.47053 0.0190292 0.035738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0929055 0 0.0675497 10.5767 4.50643

CAGE analysis