Hb_001226_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1226: 127085-128121
Sequence    

Annotation

kegg
ID rcu:RCOM_0706470
description WRKY transcription factor, putative
nr
ID XP_002516104.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q8VWQ5
description Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=2 SV=1
trembl
ID B9RQT5
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0706470 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_100 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_000336_280 0.0852653033 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
3 Hb_000215_130 0.0891939271 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
4 Hb_001186_120 0.0938517572 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
5 Hb_001832_110 0.0952437815 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
6 Hb_001439_040 0.1000535444 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
7 Hb_005333_210 0.1221672841 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
8 Hb_000018_120 0.1252668788 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_123560_020 0.1255810662 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
10 Hb_000152_770 0.1270288482 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
11 Hb_002685_100 0.1306382072 - - low temperature inducible SLTI66 [Glycine max]
12 Hb_003592_060 0.1338598197 - - hypothetical protein F383_11017 [Gossypium arboreum]
13 Hb_002304_190 0.1351756352 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
14 Hb_004446_060 0.1375167878 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_002851_070 0.1393284925 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
16 Hb_000934_240 0.1402675464 - - PREDICTED: peroxidase 13 [Jatropha curcas]
17 Hb_004709_030 0.1444697125 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
18 Hb_007007_130 0.1446454364 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
19 Hb_009486_120 0.147961066 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
20 Hb_000880_040 0.1524062209 - - -

Gene co-expression network

sample Hb_001226_100 Hb_001226_100 Hb_000336_280 Hb_000336_280 Hb_001226_100--Hb_000336_280 Hb_000215_130 Hb_000215_130 Hb_001226_100--Hb_000215_130 Hb_001186_120 Hb_001186_120 Hb_001226_100--Hb_001186_120 Hb_001832_110 Hb_001832_110 Hb_001226_100--Hb_001832_110 Hb_001439_040 Hb_001439_040 Hb_001226_100--Hb_001439_040 Hb_005333_210 Hb_005333_210 Hb_001226_100--Hb_005333_210 Hb_000336_280--Hb_001832_110 Hb_002685_100 Hb_002685_100 Hb_000336_280--Hb_002685_100 Hb_000336_280--Hb_005333_210 Hb_000336_280--Hb_000215_130 Hb_002304_190 Hb_002304_190 Hb_000336_280--Hb_002304_190 Hb_000215_130--Hb_001186_120 Hb_004709_030 Hb_004709_030 Hb_000215_130--Hb_004709_030 Hb_000215_130--Hb_005333_210 Hb_000215_130--Hb_001832_110 Hb_000880_040 Hb_000880_040 Hb_001186_120--Hb_000880_040 Hb_001186_120--Hb_004709_030 Hb_009102_010 Hb_009102_010 Hb_001186_120--Hb_009102_010 Hb_001186_120--Hb_000336_280 Hb_001832_110--Hb_002304_190 Hb_001832_110--Hb_002685_100 Hb_001832_110--Hb_001439_040 Hb_000018_120 Hb_000018_120 Hb_001832_110--Hb_000018_120 Hb_001439_040--Hb_002304_190 Hb_001439_040--Hb_000336_280 Hb_001439_040--Hb_002685_100 Hb_001439_040--Hb_000215_130 Hb_001300_140 Hb_001300_140 Hb_005333_210--Hb_001300_140 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_000753_180 Hb_000753_180 Hb_005333_210--Hb_000753_180 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110903 1.9325 16.546 5.32793 0 0.0778909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304437 0.079753 0.139417 15.3424 8.02142

CAGE analysis