Hb_001439_040

Information

Type -
Description -
Location Contig1439: 32634-38750
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12470g
description POPTRDRAFT_825577A, POPTRDRAFT_825577B; hypothetical protein
nr
ID XP_012084763.1
description PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
swissprot
ID P42738
description Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=1 SV=3
trembl
ID A0A067JWL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19892 PE=4 SV=1
Gene Ontology
ID GO:0004106
description chorismate mutase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11572: 36853-37119
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_040 0.0 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
2 Hb_001832_110 0.0995698766 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
3 Hb_001226_100 0.1000535444 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_002304_190 0.111276023 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
5 Hb_000336_280 0.1140471027 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
6 Hb_002685_100 0.117329273 - - low temperature inducible SLTI66 [Glycine max]
7 Hb_000215_130 0.1208113678 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
8 Hb_009296_060 0.1317344929 - - glutathione s-transferase, putative [Ricinus communis]
9 Hb_021346_020 0.1335437446 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
10 Hb_000753_180 0.134795118 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
11 Hb_033312_050 0.1350104085 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
12 Hb_000018_120 0.1416593196 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_005333_210 0.1423286156 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
14 Hb_000017_320 0.1432724397 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
15 Hb_001186_120 0.1469115881 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
16 Hb_001358_120 0.1481846165 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
17 Hb_004627_020 0.1498089303 - - Protein MLO, putative [Ricinus communis]
18 Hb_007007_130 0.152219444 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
19 Hb_000836_260 0.1533212088 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
20 Hb_005663_090 0.1536197536 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001439_040 Hb_001439_040 Hb_001832_110 Hb_001832_110 Hb_001439_040--Hb_001832_110 Hb_001226_100 Hb_001226_100 Hb_001439_040--Hb_001226_100 Hb_002304_190 Hb_002304_190 Hb_001439_040--Hb_002304_190 Hb_000336_280 Hb_000336_280 Hb_001439_040--Hb_000336_280 Hb_002685_100 Hb_002685_100 Hb_001439_040--Hb_002685_100 Hb_000215_130 Hb_000215_130 Hb_001439_040--Hb_000215_130 Hb_001832_110--Hb_000336_280 Hb_001832_110--Hb_002304_190 Hb_001832_110--Hb_002685_100 Hb_001832_110--Hb_001226_100 Hb_000018_120 Hb_000018_120 Hb_001832_110--Hb_000018_120 Hb_001226_100--Hb_000336_280 Hb_001226_100--Hb_000215_130 Hb_001186_120 Hb_001186_120 Hb_001226_100--Hb_001186_120 Hb_005333_210 Hb_005333_210 Hb_001226_100--Hb_005333_210 Hb_002304_190--Hb_002685_100 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_002304_190--Hb_000336_280 Hb_000017_320 Hb_000017_320 Hb_002304_190--Hb_000017_320 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120 Hb_000336_280--Hb_002685_100 Hb_000336_280--Hb_005333_210 Hb_000336_280--Hb_000215_130 Hb_002685_100--Hb_000017_320 Hb_001358_120 Hb_001358_120 Hb_002685_100--Hb_001358_120 Hb_002685_100--Hb_005333_210 Hb_000215_130--Hb_001186_120 Hb_004709_030 Hb_004709_030 Hb_000215_130--Hb_004709_030 Hb_000215_130--Hb_005333_210 Hb_000215_130--Hb_001832_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171368 2.76221 14.7281 7.75113 0 0.101492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.392111 0.753932 0.0635497 18.1144 7.91604

CAGE analysis