Hb_033312_050

Information

Type -
Description -
Location Contig33312: 75804-81099
Sequence    

Annotation

kegg
ID tcc:TCM_019149
description hypothetical protein
nr
ID XP_012077813.1
description PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
swissprot
ID A1L2I9
description Transmembrane protein 214-B OS=Xenopus laevis GN=tmem214-b PE=2 SV=1
trembl
ID A0A067KAK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13442 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34958: 79742-80160 , PASA_asmbl_34959: 76006-81063 , PASA_asmbl_34960: 76667-79473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_050 0.0 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
2 Hb_002304_190 0.0870583976 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
3 Hb_000760_080 0.1115826978 - - mutt domain protein, putative [Ricinus communis]
4 Hb_001349_020 0.1126673986 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
5 Hb_001832_110 0.1133629207 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
6 Hb_005730_070 0.1173313063 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
7 Hb_000017_320 0.1195446186 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
8 Hb_000723_050 0.12355286 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
9 Hb_001345_020 0.1247962836 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
10 Hb_002685_100 0.1270674247 - - low temperature inducible SLTI66 [Glycine max]
11 Hb_000340_350 0.127109791 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
12 Hb_083412_010 0.1292368321 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_005766_010 0.1302684077 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_001018_080 0.1320046624 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003881_020 0.1324404321 - - PREDICTED: stellacyanin-like [Jatropha curcas]
16 Hb_022092_050 0.1337937298 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
17 Hb_000616_010 0.1347203867 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001439_040 0.1350104085 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
19 Hb_008554_090 0.1361579599 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000096_210 0.1370095854 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_033312_050 Hb_033312_050 Hb_002304_190 Hb_002304_190 Hb_033312_050--Hb_002304_190 Hb_000760_080 Hb_000760_080 Hb_033312_050--Hb_000760_080 Hb_001349_020 Hb_001349_020 Hb_033312_050--Hb_001349_020 Hb_001832_110 Hb_001832_110 Hb_033312_050--Hb_001832_110 Hb_005730_070 Hb_005730_070 Hb_033312_050--Hb_005730_070 Hb_000017_320 Hb_000017_320 Hb_033312_050--Hb_000017_320 Hb_002685_100 Hb_002685_100 Hb_002304_190--Hb_002685_100 Hb_002304_190--Hb_001832_110 Hb_000336_280 Hb_000336_280 Hb_002304_190--Hb_000336_280 Hb_002304_190--Hb_000017_320 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120 Hb_001048_100 Hb_001048_100 Hb_000760_080--Hb_001048_100 Hb_000024_130 Hb_000024_130 Hb_000760_080--Hb_000024_130 Hb_005568_050 Hb_005568_050 Hb_000760_080--Hb_005568_050 Hb_002503_050 Hb_002503_050 Hb_000760_080--Hb_002503_050 Hb_000731_210 Hb_000731_210 Hb_000760_080--Hb_000731_210 Hb_005679_110 Hb_005679_110 Hb_001349_020--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001349_020--Hb_001345_020 Hb_001349_020--Hb_000017_320 Hb_001349_020--Hb_005730_070 Hb_000696_250 Hb_000696_250 Hb_001349_020--Hb_000696_250 Hb_002003_010 Hb_002003_010 Hb_001349_020--Hb_002003_010 Hb_001832_110--Hb_000336_280 Hb_001832_110--Hb_002685_100 Hb_001226_100 Hb_001226_100 Hb_001832_110--Hb_001226_100 Hb_001439_040 Hb_001439_040 Hb_001832_110--Hb_001439_040 Hb_000018_120 Hb_000018_120 Hb_001832_110--Hb_000018_120 Hb_008554_090 Hb_008554_090 Hb_005730_070--Hb_008554_090 Hb_000057_180 Hb_000057_180 Hb_005730_070--Hb_000057_180 Hb_005730_070--Hb_000017_320 Hb_005730_070--Hb_002304_190 Hb_005730_070--Hb_002003_010 Hb_000017_320--Hb_002003_010 Hb_005766_010 Hb_005766_010 Hb_000017_320--Hb_005766_010 Hb_000017_320--Hb_002685_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163071 4.96696 11.8229 6.70383 0.116097 0.125455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0976728 0.199824 0.350927 14.5804 4.46634

CAGE analysis