Hb_000018_120

Information

Type -
Description -
Location Contig18: 143055-147608
Sequence    

Annotation

kegg
ID rcu:RCOM_0801770
description ankyrin repeat-containing protein, putative
nr
ID XP_002516537.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9RS18
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0801770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17423: 143763-144341 , PASA_asmbl_17424: 147126-147427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000018_120 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000696_250 0.0990816276 - - PREDICTED: patellin-6 [Jatropha curcas]
3 Hb_003592_060 0.1056607271 - - hypothetical protein F383_11017 [Gossypium arboreum]
4 Hb_001832_110 0.1090922382 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
5 Hb_000941_010 0.1095676169 - - hypothetical protein RCOM_0504460 [Ricinus communis]
6 Hb_000336_280 0.1171006138 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
7 Hb_022092_050 0.1183090931 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
8 Hb_001349_020 0.1188567739 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
9 Hb_021346_020 0.1216056137 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
10 Hb_068804_070 0.1229038205 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
11 Hb_001345_020 0.1234003778 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
12 Hb_001186_120 0.1249538874 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
13 Hb_001226_100 0.1252668788 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_002851_070 0.1297745414 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
15 Hb_014250_010 0.1308148795 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
16 Hb_006266_010 0.1322150614 - - unnamed protein product [Vitis vinifera]
17 Hb_000215_130 0.132818586 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
18 Hb_000880_040 0.1345861647 - - -
19 Hb_002304_190 0.1354424744 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
20 Hb_001832_140 0.1360944803 - - endomembrane protein 70 family protein [Medicago truncatula]

Gene co-expression network

sample Hb_000018_120 Hb_000018_120 Hb_000696_250 Hb_000696_250 Hb_000018_120--Hb_000696_250 Hb_003592_060 Hb_003592_060 Hb_000018_120--Hb_003592_060 Hb_001832_110 Hb_001832_110 Hb_000018_120--Hb_001832_110 Hb_000941_010 Hb_000941_010 Hb_000018_120--Hb_000941_010 Hb_000336_280 Hb_000336_280 Hb_000018_120--Hb_000336_280 Hb_022092_050 Hb_022092_050 Hb_000018_120--Hb_022092_050 Hb_001832_140 Hb_001832_140 Hb_000696_250--Hb_001832_140 Hb_001252_050 Hb_001252_050 Hb_000696_250--Hb_001252_050 Hb_001349_020 Hb_001349_020 Hb_000696_250--Hb_001349_020 Hb_009767_030 Hb_009767_030 Hb_000696_250--Hb_009767_030 Hb_000696_250--Hb_022092_050 Hb_006266_010 Hb_006266_010 Hb_003592_060--Hb_006266_010 Hb_005743_010 Hb_005743_010 Hb_003592_060--Hb_005743_010 Hb_068804_070 Hb_068804_070 Hb_003592_060--Hb_068804_070 Hb_009693_010 Hb_009693_010 Hb_003592_060--Hb_009693_010 Hb_002217_060 Hb_002217_060 Hb_003592_060--Hb_002217_060 Hb_001832_110--Hb_000336_280 Hb_002304_190 Hb_002304_190 Hb_001832_110--Hb_002304_190 Hb_002685_100 Hb_002685_100 Hb_001832_110--Hb_002685_100 Hb_001226_100 Hb_001226_100 Hb_001832_110--Hb_001226_100 Hb_001439_040 Hb_001439_040 Hb_001832_110--Hb_001439_040 Hb_001437_260 Hb_001437_260 Hb_000941_010--Hb_001437_260 Hb_001104_020 Hb_001104_020 Hb_000941_010--Hb_001104_020 Hb_002918_120 Hb_002918_120 Hb_000941_010--Hb_002918_120 Hb_000732_220 Hb_000732_220 Hb_000941_010--Hb_000732_220 Hb_000024_150 Hb_000024_150 Hb_000941_010--Hb_000024_150 Hb_000731_280 Hb_000731_280 Hb_000941_010--Hb_000731_280 Hb_000336_280--Hb_002685_100 Hb_000336_280--Hb_001226_100 Hb_005333_210 Hb_005333_210 Hb_000336_280--Hb_005333_210 Hb_000215_130 Hb_000215_130 Hb_000336_280--Hb_000215_130 Hb_000336_280--Hb_002304_190 Hb_022092_050--Hb_002304_190 Hb_009486_120 Hb_009486_120 Hb_022092_050--Hb_009486_120 Hb_022092_050--Hb_001349_020 Hb_022092_050--Hb_001832_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.34985 2.13797 1.05736 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.75606 0.79885

CAGE analysis