Hb_001437_260

Information

Type -
Description -
Location Contig1437: 248619-250763
Sequence    

Annotation

kegg
ID rcu:RCOM_0473020
description metal ion binding protein, putative
nr
ID XP_012064725.1
description PREDICTED: protein FAM98B-like [Jatropha curcas]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID A0A067L9R4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05455 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11543: 248540-250609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_260 0.0 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
2 Hb_000941_010 0.070397562 - - hypothetical protein RCOM_0504460 [Ricinus communis]
3 Hb_004446_060 0.0894786753 - - neutral/alkaline invertase [Manihot esculenta]
4 Hb_002805_180 0.093092922 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002918_120 0.0960704374 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_004832_010 0.1107528549 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001104_020 0.113457687 - - DNA binding protein, putative [Ricinus communis]
8 Hb_005144_060 0.1166716316 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
9 Hb_000359_180 0.117593005 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000732_220 0.1182429943 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
11 Hb_015001_030 0.1195197296 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
12 Hb_021346_020 0.1204501294 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
13 Hb_000731_280 0.122726552 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
14 Hb_019570_010 0.1275392759 - - lyase, putative [Ricinus communis]
15 Hb_000834_220 0.1297653228 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
16 Hb_001195_740 0.1299334265 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
17 Hb_000024_150 0.1311737869 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
18 Hb_002851_070 0.131384699 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
19 Hb_007101_040 0.1319214795 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
20 Hb_001638_150 0.1339332672 - - acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001437_260 Hb_001437_260 Hb_000941_010 Hb_000941_010 Hb_001437_260--Hb_000941_010 Hb_004446_060 Hb_004446_060 Hb_001437_260--Hb_004446_060 Hb_002805_180 Hb_002805_180 Hb_001437_260--Hb_002805_180 Hb_002918_120 Hb_002918_120 Hb_001437_260--Hb_002918_120 Hb_004832_010 Hb_004832_010 Hb_001437_260--Hb_004832_010 Hb_001104_020 Hb_001104_020 Hb_001437_260--Hb_001104_020 Hb_000941_010--Hb_001104_020 Hb_000941_010--Hb_002918_120 Hb_000732_220 Hb_000732_220 Hb_000941_010--Hb_000732_220 Hb_000024_150 Hb_000024_150 Hb_000941_010--Hb_000024_150 Hb_000731_280 Hb_000731_280 Hb_000941_010--Hb_000731_280 Hb_004446_060--Hb_002918_120 Hb_007007_130 Hb_007007_130 Hb_004446_060--Hb_007007_130 Hb_002851_070 Hb_002851_070 Hb_004446_060--Hb_002851_070 Hb_021346_020 Hb_021346_020 Hb_004446_060--Hb_021346_020 Hb_004446_060--Hb_004832_010 Hb_000359_180 Hb_000359_180 Hb_002805_180--Hb_000359_180 Hb_002045_010 Hb_002045_010 Hb_002805_180--Hb_002045_010 Hb_002805_180--Hb_000732_220 Hb_005144_060 Hb_005144_060 Hb_002805_180--Hb_005144_060 Hb_019570_010 Hb_019570_010 Hb_002805_180--Hb_019570_010 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_002918_120--Hb_005144_060 Hb_002918_120--Hb_021346_020 Hb_001310_060 Hb_001310_060 Hb_004832_010--Hb_001310_060 Hb_004832_010--Hb_000359_180 Hb_004832_010--Hb_019570_010 Hb_001500_080 Hb_001500_080 Hb_004832_010--Hb_001500_080 Hb_001104_020--Hb_000732_220 Hb_093218_010 Hb_093218_010 Hb_001104_020--Hb_093218_010 Hb_000152_120 Hb_000152_120 Hb_001104_020--Hb_000152_120 Hb_005892_040 Hb_005892_040 Hb_001104_020--Hb_005892_040 Hb_000951_090 Hb_000951_090 Hb_001104_020--Hb_000951_090 Hb_001104_020--Hb_019570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0610609 16.6607 111.477 71.2199 0.129778 0.159162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25075 1.18086 2.18552 54.8581 38.675

CAGE analysis