Hb_005144_060

Information

Type -
Description -
Location Contig5144: 43462-46377
Sequence    

Annotation

kegg
ID tcc:TCM_029355
description Disease resistance family protein / LRR family protein, putative
nr
ID XP_007024895.1
description Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A061GEE0
description Disease resistance family protein / LRR family protein, putative OS=Theobroma cacao GN=TCM_029355 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46439: 45933-46625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_060 0.0 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
2 Hb_000834_220 0.0803055254 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
3 Hb_002918_120 0.0877117486 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002805_180 0.0954113245 - - conserved hypothetical protein [Ricinus communis]
5 Hb_019570_010 0.1020935211 - - lyase, putative [Ricinus communis]
6 Hb_004592_010 0.1026506024 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
7 Hb_001104_150 0.1085615809 - - PREDICTED: protein ROS1 [Jatropha curcas]
8 Hb_004446_060 0.1104978607 - - neutral/alkaline invertase [Manihot esculenta]
9 Hb_000207_350 0.1150516051 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
10 Hb_000732_220 0.11531604 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
11 Hb_001437_260 0.1166716316 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
12 Hb_000951_090 0.1194727519 - - Oligopeptide transporter, putative [Ricinus communis]
13 Hb_001104_020 0.1261239924 - - DNA binding protein, putative [Ricinus communis]
14 Hb_001040_080 0.1266382822 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
15 Hb_001517_070 0.1284321119 - - protein with unknown function [Ricinus communis]
16 Hb_004832_010 0.1289210459 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000418_170 0.1291309531 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
18 Hb_005730_110 0.1291694579 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
19 Hb_000359_180 0.1293989461 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002027_430 0.1296796122 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]

Gene co-expression network

sample Hb_005144_060 Hb_005144_060 Hb_000834_220 Hb_000834_220 Hb_005144_060--Hb_000834_220 Hb_002918_120 Hb_002918_120 Hb_005144_060--Hb_002918_120 Hb_002805_180 Hb_002805_180 Hb_005144_060--Hb_002805_180 Hb_019570_010 Hb_019570_010 Hb_005144_060--Hb_019570_010 Hb_004592_010 Hb_004592_010 Hb_005144_060--Hb_004592_010 Hb_001104_150 Hb_001104_150 Hb_005144_060--Hb_001104_150 Hb_001440_010 Hb_001440_010 Hb_000834_220--Hb_001440_010 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_004446_060 Hb_004446_060 Hb_002918_120--Hb_004446_060 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_000359_180 Hb_000359_180 Hb_002805_180--Hb_000359_180 Hb_002045_010 Hb_002045_010 Hb_002805_180--Hb_002045_010 Hb_002805_180--Hb_001437_260 Hb_000732_220 Hb_000732_220 Hb_002805_180--Hb_000732_220 Hb_002805_180--Hb_019570_010 Hb_019570_010--Hb_000732_220 Hb_019570_010--Hb_004592_010 Hb_001104_020 Hb_001104_020 Hb_019570_010--Hb_001104_020 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150 Hb_003666_070 Hb_003666_070 Hb_004592_010--Hb_003666_070 Hb_005730_110 Hb_005730_110 Hb_004592_010--Hb_005730_110 Hb_008304_010 Hb_008304_010 Hb_004592_010--Hb_008304_010 Hb_004592_010--Hb_000732_220 Hb_004592_010--Hb_000359_180 Hb_000207_350 Hb_000207_350 Hb_001104_150--Hb_000207_350 Hb_001775_120 Hb_001775_120 Hb_001104_150--Hb_001775_120 Hb_005568_020 Hb_005568_020 Hb_001104_150--Hb_005568_020 Hb_001104_150--Hb_005730_110 Hb_022092_110 Hb_022092_110 Hb_001104_150--Hb_022092_110 Hb_004218_200 Hb_004218_200 Hb_001104_150--Hb_004218_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0722508 0.332659 2.37347 1.91264 0.0440859 0.0306482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0448953 0.0235527 0.045032 1.06046 1.25561

CAGE analysis