Hb_001104_150

Information

Type -
Description -
Location Contig1104: 163819-175503
Sequence    

Annotation

kegg
ID tcc:TCM_022433
description Repressor of gene silencing 1 isoform 1
nr
ID XP_012066501.1
description PREDICTED: protein ROS1 [Jatropha curcas]
swissprot
ID Q8LK56
description Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2
trembl
ID A0A067LE41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23695 PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein ros1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03248: 163869-164522 , PASA_asmbl_03249: 163912-164537 , PASA_asmbl_03250: 164570-166089 , PASA_asmbl_03251: 165514-166976 , PASA_asmbl_03252: 167037-175379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_150 0.0 - - PREDICTED: protein ROS1 [Jatropha curcas]
2 Hb_000207_350 0.083753189 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
3 Hb_001775_120 0.0925235892 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
4 Hb_005568_020 0.0997748848 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
5 Hb_005730_110 0.1054588424 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
6 Hb_022092_110 0.1063615223 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
7 Hb_004218_200 0.1069849572 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_005144_060 0.1085615809 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
9 Hb_004855_020 0.1109704368 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
10 Hb_002311_280 0.1122930725 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_001936_190 0.1161606663 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
12 Hb_003580_050 0.1162169974 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
13 Hb_000922_160 0.1193701745 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
14 Hb_001040_080 0.1212557529 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
15 Hb_000417_050 0.1225540599 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
16 Hb_002662_110 0.1228435085 - - Kinesin heavy chain, putative [Ricinus communis]
17 Hb_000834_220 0.1230650306 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
18 Hb_028008_040 0.1234733775 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003606_050 0.1239472322 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
20 Hb_010868_040 0.1239782084 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001104_150 Hb_001104_150 Hb_000207_350 Hb_000207_350 Hb_001104_150--Hb_000207_350 Hb_001775_120 Hb_001775_120 Hb_001104_150--Hb_001775_120 Hb_005568_020 Hb_005568_020 Hb_001104_150--Hb_005568_020 Hb_005730_110 Hb_005730_110 Hb_001104_150--Hb_005730_110 Hb_022092_110 Hb_022092_110 Hb_001104_150--Hb_022092_110 Hb_004218_200 Hb_004218_200 Hb_001104_150--Hb_004218_200 Hb_004855_020 Hb_004855_020 Hb_000207_350--Hb_004855_020 Hb_001123_310 Hb_001123_310 Hb_000207_350--Hb_001123_310 Hb_010868_040 Hb_010868_040 Hb_000207_350--Hb_010868_040 Hb_010381_040 Hb_010381_040 Hb_000207_350--Hb_010381_040 Hb_000207_350--Hb_005568_020 Hb_001775_120--Hb_000207_350 Hb_000922_160 Hb_000922_160 Hb_001775_120--Hb_000922_160 Hb_000891_010 Hb_000891_010 Hb_001775_120--Hb_000891_010 Hb_031385_010 Hb_031385_010 Hb_001775_120--Hb_031385_010 Hb_001775_120--Hb_004855_020 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000627_040 Hb_000627_040 Hb_005730_110--Hb_000627_040 Hb_026240_020 Hb_026240_020 Hb_005730_110--Hb_026240_020 Hb_012404_020 Hb_012404_020 Hb_005730_110--Hb_012404_020 Hb_000418_170 Hb_000418_170 Hb_005730_110--Hb_000418_170 Hb_005730_110--Hb_022092_110 Hb_004592_010 Hb_004592_010 Hb_005730_110--Hb_004592_010 Hb_001936_180 Hb_001936_180 Hb_022092_110--Hb_001936_180 Hb_001946_200 Hb_001946_200 Hb_022092_110--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_022092_110--Hb_001440_010 Hb_022092_110--Hb_000735_060 Hb_022092_110--Hb_000418_170 Hb_002311_280 Hb_002311_280 Hb_022092_110--Hb_002311_280 Hb_000320_310 Hb_000320_310 Hb_004218_200--Hb_000320_310 Hb_003580_050 Hb_003580_050 Hb_004218_200--Hb_003580_050 Hb_001357_050 Hb_001357_050 Hb_004218_200--Hb_001357_050 Hb_028008_040 Hb_028008_040 Hb_004218_200--Hb_028008_040 Hb_004218_200--Hb_005730_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.650165 4.29501 18.3458 16.7604 0.950524 0.350897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.394186 0.379765 0.340503 5.31148 13.349

CAGE analysis