Hb_004446_060

Information

Type -
Description -
Location Contig4446: 38100-42375
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003483mg
description hypothetical protein
nr
ID AFH77953.1
description neutral/alkaline invertase [Manihot esculenta]
swissprot
ID Q9SW48
description Probable alkaline/neutral invertase B OS=Arabidopsis thaliana GN=INVB PE=1 SV=1
trembl
ID I0CL53
description Neutral/alkaline invertase OS=Manihot esculenta GN=NINV3 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42781: 38102-41832 , PASA_asmbl_42782: 41880-42467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004446_060 0.0 - - neutral/alkaline invertase [Manihot esculenta]
2 Hb_002918_120 0.0812764129 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001437_260 0.0894786753 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
4 Hb_007007_130 0.0995400972 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
5 Hb_002851_070 0.1020187794 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
6 Hb_021346_020 0.1030140723 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
7 Hb_004832_010 0.110352622 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005144_060 0.1104978607 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
9 Hb_000941_010 0.111327572 - - hypothetical protein RCOM_0504460 [Ricinus communis]
10 Hb_002805_180 0.116278389 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001500_080 0.1215210145 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
12 Hb_000934_240 0.1228485255 - - PREDICTED: peroxidase 13 [Jatropha curcas]
13 Hb_001195_740 0.1231378687 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
14 Hb_000866_040 0.1239557532 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
15 Hb_000152_770 0.1259623513 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
16 Hb_000732_220 0.1266631293 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
17 Hb_000152_120 0.1293399164 - - alpha-l-fucosidase, putative [Ricinus communis]
18 Hb_019570_010 0.1297721242 - - lyase, putative [Ricinus communis]
19 Hb_023771_030 0.1309190259 - - unnamed protein product [Vitis vinifera]
20 Hb_001104_020 0.1335275174 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004446_060 Hb_004446_060 Hb_002918_120 Hb_002918_120 Hb_004446_060--Hb_002918_120 Hb_001437_260 Hb_001437_260 Hb_004446_060--Hb_001437_260 Hb_007007_130 Hb_007007_130 Hb_004446_060--Hb_007007_130 Hb_002851_070 Hb_002851_070 Hb_004446_060--Hb_002851_070 Hb_021346_020 Hb_021346_020 Hb_004446_060--Hb_021346_020 Hb_004832_010 Hb_004832_010 Hb_004446_060--Hb_004832_010 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_002918_120--Hb_001437_260 Hb_002918_120--Hb_021346_020 Hb_000941_010 Hb_000941_010 Hb_001437_260--Hb_000941_010 Hb_002805_180 Hb_002805_180 Hb_001437_260--Hb_002805_180 Hb_001437_260--Hb_004832_010 Hb_001104_020 Hb_001104_020 Hb_001437_260--Hb_001104_020 Hb_007007_130--Hb_002851_070 Hb_000152_770 Hb_000152_770 Hb_007007_130--Hb_000152_770 Hb_023771_030 Hb_023771_030 Hb_007007_130--Hb_023771_030 Hb_001500_080 Hb_001500_080 Hb_007007_130--Hb_001500_080 Hb_007007_130--Hb_001437_260 Hb_002851_070--Hb_023771_030 Hb_009693_010 Hb_009693_010 Hb_002851_070--Hb_009693_010 Hb_000880_040 Hb_000880_040 Hb_002851_070--Hb_000880_040 Hb_000152_120 Hb_000152_120 Hb_002851_070--Hb_000152_120 Hb_015001_030 Hb_015001_030 Hb_021346_020--Hb_015001_030 Hb_014250_010 Hb_014250_010 Hb_021346_020--Hb_014250_010 Hb_005766_010 Hb_005766_010 Hb_021346_020--Hb_005766_010 Hb_000616_010 Hb_000616_010 Hb_021346_020--Hb_000616_010 Hb_001310_060 Hb_001310_060 Hb_004832_010--Hb_001310_060 Hb_000359_180 Hb_000359_180 Hb_004832_010--Hb_000359_180 Hb_019570_010 Hb_019570_010 Hb_004832_010--Hb_019570_010 Hb_004832_010--Hb_001500_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.267989 1.62224 14.6659 8.02745 0 0.119225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.291931 0.106016 0.201063 8.49844 6.27421

CAGE analysis