Hb_007007_130

Information

Type transcription factor
Description TF Family: MIKC
Location Contig7007: 96009-104091
Sequence    

Annotation

kegg
ID tcc:TCM_005456
description AGAMOUS-like 20 isoform 2
nr
ID ACZ36915.1
description MADS-box transcription factor 2 [Hevea brasiliensis]
swissprot
ID O64645
description MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1
trembl
ID D1MFS7
description MADS-box transcription factor 2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein soc1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54844: 95822-95992 , PASA_asmbl_54845: 102237-104114 , PASA_asmbl_54849: 96025-104202
cDNA
(Sanger)
(ID:Location)		 004_C04.ab1: 102325-103242

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_130 0.0 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
2 Hb_004446_060 0.0995400972 - - neutral/alkaline invertase [Manihot esculenta]
3 Hb_002851_070 0.103642561 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
4 Hb_000152_770 0.1151395586 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
5 Hb_023771_030 0.1264193289 - - unnamed protein product [Vitis vinifera]
6 Hb_001500_080 0.1305127741 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
7 Hb_001437_260 0.1356772051 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
8 Hb_004832_010 0.1406893131 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000934_240 0.1440028247 - - PREDICTED: peroxidase 13 [Jatropha curcas]
10 Hb_001226_100 0.1446454364 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_001439_040 0.152219444 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
12 Hb_019570_010 0.1532949976 - - lyase, putative [Ricinus communis]
13 Hb_000152_120 0.1555922522 - - alpha-l-fucosidase, putative [Ricinus communis]
14 Hb_002918_120 0.1560175981 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_009693_010 0.1572149879 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
16 Hb_003592_060 0.1575741035 - - hypothetical protein F383_11017 [Gossypium arboreum]
17 Hb_000880_040 0.1579530787 - - -
18 Hb_002636_060 0.1581925175 - - conserved hypothetical protein [Ricinus communis]
19 Hb_021346_020 0.1587415164 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
20 Hb_002805_180 0.1593101011 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007007_130 Hb_007007_130 Hb_004446_060 Hb_004446_060 Hb_007007_130--Hb_004446_060 Hb_002851_070 Hb_002851_070 Hb_007007_130--Hb_002851_070 Hb_000152_770 Hb_000152_770 Hb_007007_130--Hb_000152_770 Hb_023771_030 Hb_023771_030 Hb_007007_130--Hb_023771_030 Hb_001500_080 Hb_001500_080 Hb_007007_130--Hb_001500_080 Hb_001437_260 Hb_001437_260 Hb_007007_130--Hb_001437_260 Hb_002918_120 Hb_002918_120 Hb_004446_060--Hb_002918_120 Hb_004446_060--Hb_001437_260 Hb_004446_060--Hb_002851_070 Hb_021346_020 Hb_021346_020 Hb_004446_060--Hb_021346_020 Hb_004832_010 Hb_004832_010 Hb_004446_060--Hb_004832_010 Hb_002851_070--Hb_023771_030 Hb_009693_010 Hb_009693_010 Hb_002851_070--Hb_009693_010 Hb_000880_040 Hb_000880_040 Hb_002851_070--Hb_000880_040 Hb_000152_120 Hb_000152_120 Hb_002851_070--Hb_000152_120 Hb_000934_240 Hb_000934_240 Hb_000152_770--Hb_000934_240 Hb_000152_770--Hb_004446_060 Hb_003592_060 Hb_003592_060 Hb_000152_770--Hb_003592_060 Hb_001226_100 Hb_001226_100 Hb_000152_770--Hb_001226_100 Hb_000152_770--Hb_001500_080 Hb_006916_130 Hb_006916_130 Hb_023771_030--Hb_006916_130 Hb_002217_060 Hb_002217_060 Hb_023771_030--Hb_002217_060 Hb_012813_020 Hb_012813_020 Hb_023771_030--Hb_012813_020 Hb_023771_030--Hb_009693_010 Hb_023771_030--Hb_003592_060 Hb_001500_080--Hb_009693_010 Hb_001500_080--Hb_000934_240 Hb_001500_080--Hb_000880_040 Hb_000260_750 Hb_000260_750 Hb_001500_080--Hb_000260_750 Hb_001500_080--Hb_004832_010 Hb_001500_080--Hb_002851_070 Hb_000941_010 Hb_000941_010 Hb_001437_260--Hb_000941_010 Hb_002805_180 Hb_002805_180 Hb_001437_260--Hb_002805_180 Hb_001437_260--Hb_002918_120 Hb_001437_260--Hb_004832_010 Hb_001104_020 Hb_001104_020 Hb_001437_260--Hb_001104_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241384 5.67252 84.7397 41.3742 0.0188588 0.100526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4191 3.07758 0.80362 50.8125 42.1464

CAGE analysis