Hb_002805_180

Information

Type -
Description -
Location Contig2805: 145952-146983
Sequence    

Annotation

kegg
ID rcu:RCOM_0063160
description hypothetical protein
nr
ID XP_002531125.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O49508
description F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1
trembl
ID B9SYQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0063160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29292: 146574-147013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000359_180 0.0806393548 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002045_010 0.0851052937 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
4 Hb_001437_260 0.093092922 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
5 Hb_000732_220 0.0935815423 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
6 Hb_005144_060 0.0954113245 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
7 Hb_019570_010 0.0954646068 - - lyase, putative [Ricinus communis]
8 Hb_001104_020 0.0970789385 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000951_090 0.0993351088 - - Oligopeptide transporter, putative [Ricinus communis]
10 Hb_000739_170 0.1028187548 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
11 Hb_004592_010 0.1065374057 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
12 Hb_001524_120 0.1073286654 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
13 Hb_002918_120 0.1144112608 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_009767_060 0.1162534398 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
15 Hb_004446_060 0.116278389 - - neutral/alkaline invertase [Manihot esculenta]
16 Hb_000941_010 0.118933025 - - hypothetical protein RCOM_0504460 [Ricinus communis]
17 Hb_004832_010 0.1212667878 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005675_050 0.1220192489 - - alpha-glucosidase, putative [Ricinus communis]
19 Hb_093218_010 0.122515165 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
20 Hb_000418_170 0.1225171737 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_002805_180 Hb_002805_180 Hb_000359_180 Hb_000359_180 Hb_002805_180--Hb_000359_180 Hb_002045_010 Hb_002045_010 Hb_002805_180--Hb_002045_010 Hb_001437_260 Hb_001437_260 Hb_002805_180--Hb_001437_260 Hb_000732_220 Hb_000732_220 Hb_002805_180--Hb_000732_220 Hb_005144_060 Hb_005144_060 Hb_002805_180--Hb_005144_060 Hb_019570_010 Hb_019570_010 Hb_002805_180--Hb_019570_010 Hb_000359_180--Hb_000732_220 Hb_001310_060 Hb_001310_060 Hb_000359_180--Hb_001310_060 Hb_000077_300 Hb_000077_300 Hb_000359_180--Hb_000077_300 Hb_004832_010 Hb_004832_010 Hb_000359_180--Hb_004832_010 Hb_004592_010 Hb_004592_010 Hb_000359_180--Hb_004592_010 Hb_009767_060 Hb_009767_060 Hb_002045_010--Hb_009767_060 Hb_002045_010--Hb_000359_180 Hb_005181_170 Hb_005181_170 Hb_002045_010--Hb_005181_170 Hb_000739_170 Hb_000739_170 Hb_002045_010--Hb_000739_170 Hb_004330_040 Hb_004330_040 Hb_002045_010--Hb_004330_040 Hb_000941_010 Hb_000941_010 Hb_001437_260--Hb_000941_010 Hb_004446_060 Hb_004446_060 Hb_001437_260--Hb_004446_060 Hb_002918_120 Hb_002918_120 Hb_001437_260--Hb_002918_120 Hb_001437_260--Hb_004832_010 Hb_001104_020 Hb_001104_020 Hb_001437_260--Hb_001104_020 Hb_000732_220--Hb_001104_020 Hb_000732_220--Hb_019570_010 Hb_000152_120 Hb_000152_120 Hb_000732_220--Hb_000152_120 Hb_000732_220--Hb_004592_010 Hb_000834_220 Hb_000834_220 Hb_005144_060--Hb_000834_220 Hb_005144_060--Hb_002918_120 Hb_005144_060--Hb_019570_010 Hb_005144_060--Hb_004592_010 Hb_001104_150 Hb_001104_150 Hb_005144_060--Hb_001104_150 Hb_019570_010--Hb_004592_010 Hb_019570_010--Hb_001104_020 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0532098 1.15802 13.1158 10.809 0 0.116417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0974678 0.11499 0.141391 5.39098 5.50114

CAGE analysis