Hb_019570_010

Information

Type -
Description -
Location Contig19570: 7030-12080
Sequence    

Annotation

kegg
ID rcu:RCOM_0482760
description lyase, putative
nr
ID XP_002527356.1
description lyase, putative [Ricinus communis]
swissprot
ID Q8RJP2
description Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1
trembl
ID B9SMY7
description Lyase, putative OS=Ricinus communis GN=RCOM_0482760 PE=4 SV=1
Gene Ontology
ID GO:0016829
description rhamnogalacturonate lyase b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19596: 10211-10804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019570_010 0.0 - - lyase, putative [Ricinus communis]
2 Hb_000732_220 0.0762948136 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
3 Hb_004592_010 0.0865423658 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
4 Hb_001104_020 0.093456123 - - DNA binding protein, putative [Ricinus communis]
5 Hb_002805_180 0.0954646068 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000008_150 0.0973226266 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
7 Hb_005144_060 0.1020935211 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
8 Hb_000359_180 0.1040833752 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000416_090 0.1040869297 - - Aquaporin NIP1.1, putative [Ricinus communis]
10 Hb_004832_010 0.1048580589 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000152_120 0.1077608881 - - alpha-l-fucosidase, putative [Ricinus communis]
12 Hb_001488_420 0.1096196331 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
13 Hb_000951_090 0.1096546604 - - Oligopeptide transporter, putative [Ricinus communis]
14 Hb_004218_140 0.1126016239 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
15 Hb_002045_010 0.1163358357 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
16 Hb_004855_080 0.1168587972 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
17 Hb_003506_010 0.1179517117 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
18 Hb_004602_010 0.1180095313 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
19 Hb_001500_080 0.1190599786 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
20 Hb_008304_010 0.1192095919 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_019570_010 Hb_019570_010 Hb_000732_220 Hb_000732_220 Hb_019570_010--Hb_000732_220 Hb_004592_010 Hb_004592_010 Hb_019570_010--Hb_004592_010 Hb_001104_020 Hb_001104_020 Hb_019570_010--Hb_001104_020 Hb_002805_180 Hb_002805_180 Hb_019570_010--Hb_002805_180 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150 Hb_005144_060 Hb_005144_060 Hb_019570_010--Hb_005144_060 Hb_000732_220--Hb_001104_020 Hb_000152_120 Hb_000152_120 Hb_000732_220--Hb_000152_120 Hb_000359_180 Hb_000359_180 Hb_000732_220--Hb_000359_180 Hb_000732_220--Hb_002805_180 Hb_000732_220--Hb_004592_010 Hb_003666_070 Hb_003666_070 Hb_004592_010--Hb_003666_070 Hb_005730_110 Hb_005730_110 Hb_004592_010--Hb_005730_110 Hb_008304_010 Hb_008304_010 Hb_004592_010--Hb_008304_010 Hb_004592_010--Hb_000359_180 Hb_093218_010 Hb_093218_010 Hb_001104_020--Hb_093218_010 Hb_001104_020--Hb_000152_120 Hb_005892_040 Hb_005892_040 Hb_001104_020--Hb_005892_040 Hb_000951_090 Hb_000951_090 Hb_001104_020--Hb_000951_090 Hb_002805_180--Hb_000359_180 Hb_002045_010 Hb_002045_010 Hb_002805_180--Hb_002045_010 Hb_001437_260 Hb_001437_260 Hb_002805_180--Hb_001437_260 Hb_002805_180--Hb_005144_060 Hb_004855_080 Hb_004855_080 Hb_000008_150--Hb_004855_080 Hb_001488_420 Hb_001488_420 Hb_000008_150--Hb_001488_420 Hb_001405_040 Hb_001405_040 Hb_000008_150--Hb_001405_040 Hb_004602_010 Hb_004602_010 Hb_000008_150--Hb_004602_010 Hb_003506_010 Hb_003506_010 Hb_000008_150--Hb_003506_010 Hb_000008_150--Hb_005892_040 Hb_000834_220 Hb_000834_220 Hb_005144_060--Hb_000834_220 Hb_002918_120 Hb_002918_120 Hb_005144_060--Hb_002918_120 Hb_005144_060--Hb_004592_010 Hb_001104_150 Hb_001104_150 Hb_005144_060--Hb_001104_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284875 0.449957 4.84774 3.24082 0.0285257 0.018182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0679047 0.0322267 1.86336 2.8735

CAGE analysis