Hb_004330_040

Information

Type -
Description -
Location Contig4330: 49290-52265
Sequence    

Annotation

kegg
ID rcu:RCOM_0189850
description hypothetical protein
nr
ID XP_002531967.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T149
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0189850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004330_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032260_060 0.0416453697 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
3 Hb_001473_060 0.0659324221 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
4 Hb_003754_020 0.0713017216 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_005181_170 0.1025348162 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
6 Hb_000310_110 0.1037992608 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
7 Hb_002045_010 0.1078885707 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
8 Hb_009767_060 0.1127747662 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
9 Hb_093218_010 0.1135553867 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
10 Hb_000714_060 0.1143260407 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
11 Hb_004055_090 0.1144197158 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
12 Hb_000112_080 0.1257059083 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
13 Hb_002805_180 0.1296895821 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000345_230 0.1305543695 - - -
15 Hb_002276_250 0.1317797439 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
16 Hb_032572_010 0.1331720852 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
17 Hb_010264_020 0.133744735 - - unnamed protein product [Vitis vinifera]
18 Hb_000359_180 0.1358981758 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012518_080 0.1371385674 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
20 Hb_159809_040 0.1413462794 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004330_040 Hb_004330_040 Hb_032260_060 Hb_032260_060 Hb_004330_040--Hb_032260_060 Hb_001473_060 Hb_001473_060 Hb_004330_040--Hb_001473_060 Hb_003754_020 Hb_003754_020 Hb_004330_040--Hb_003754_020 Hb_005181_170 Hb_005181_170 Hb_004330_040--Hb_005181_170 Hb_000310_110 Hb_000310_110 Hb_004330_040--Hb_000310_110 Hb_002045_010 Hb_002045_010 Hb_004330_040--Hb_002045_010 Hb_032260_060--Hb_001473_060 Hb_032260_060--Hb_003754_020 Hb_093218_010 Hb_093218_010 Hb_032260_060--Hb_093218_010 Hb_000714_060 Hb_000714_060 Hb_032260_060--Hb_000714_060 Hb_032260_060--Hb_000310_110 Hb_001473_060--Hb_003754_020 Hb_001473_060--Hb_000714_060 Hb_000668_050 Hb_000668_050 Hb_001473_060--Hb_000668_050 Hb_001473_060--Hb_093218_010 Hb_004055_090 Hb_004055_090 Hb_003754_020--Hb_004055_090 Hb_002276_250 Hb_002276_250 Hb_003754_020--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_000112_080 Hb_000112_080 Hb_005181_170--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_005181_170--Hb_007218_040 Hb_000297_210 Hb_000297_210 Hb_005181_170--Hb_000297_210 Hb_001140_300 Hb_001140_300 Hb_005181_170--Hb_001140_300 Hb_004122_010 Hb_004122_010 Hb_005181_170--Hb_004122_010 Hb_001396_030 Hb_001396_030 Hb_005181_170--Hb_001396_030 Hb_009189_100 Hb_009189_100 Hb_000310_110--Hb_009189_100 Hb_003935_040 Hb_003935_040 Hb_000310_110--Hb_003935_040 Hb_000162_190 Hb_000162_190 Hb_000310_110--Hb_000162_190 Hb_007290_050 Hb_007290_050 Hb_000310_110--Hb_007290_050 Hb_000345_230 Hb_000345_230 Hb_000310_110--Hb_000345_230 Hb_002805_180 Hb_002805_180 Hb_002045_010--Hb_002805_180 Hb_009767_060 Hb_009767_060 Hb_002045_010--Hb_009767_060 Hb_000359_180 Hb_000359_180 Hb_002045_010--Hb_000359_180 Hb_002045_010--Hb_005181_170 Hb_000739_170 Hb_000739_170 Hb_002045_010--Hb_000739_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0282098 0.601158 0.761289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.271852 0.241533

CAGE analysis