Hb_000832_250

Information

Type -
Description -
Location Contig832: 240637-241935
Sequence    

Annotation

kegg
ID rcu:RCOM_0190600
description hypothetical protein
nr
ID XP_012081577.1
description PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
swissprot
ID Q9LX14
description Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1
trembl
ID A0A067K4A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18443 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_250 0.0 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
2 Hb_004519_010 0.1178921864 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
3 Hb_001019_210 0.1248093659 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
4 Hb_079394_010 0.1297937294 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_024948_010 0.1537152112 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
6 Hb_000215_420 0.1610312975 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
7 Hb_000101_370 0.1615191043 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
8 Hb_000566_110 0.1647290855 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
9 Hb_001102_060 0.1658568384 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
10 Hb_006573_260 0.1743899048 - - -
11 Hb_005333_210 0.176364381 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
12 Hb_106321_010 0.176436906 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
13 Hb_001004_130 0.1782054328 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
14 Hb_005357_180 0.182376778 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
15 Hb_001005_210 0.1852757535 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
16 Hb_000336_280 0.1869307104 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
17 Hb_010053_010 0.1880765037 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
18 Hb_000075_030 0.190383891 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
19 Hb_164300_010 0.1923715385 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
20 Hb_123560_020 0.1970914458 - - hypothetical protein JCGZ_12464 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_250 Hb_000832_250 Hb_004519_010 Hb_004519_010 Hb_000832_250--Hb_004519_010 Hb_001019_210 Hb_001019_210 Hb_000832_250--Hb_001019_210 Hb_079394_010 Hb_079394_010 Hb_000832_250--Hb_079394_010 Hb_024948_010 Hb_024948_010 Hb_000832_250--Hb_024948_010 Hb_000215_420 Hb_000215_420 Hb_000832_250--Hb_000215_420 Hb_000101_370 Hb_000101_370 Hb_000832_250--Hb_000101_370 Hb_004519_010--Hb_001019_210 Hb_004519_010--Hb_000215_420 Hb_004519_010--Hb_079394_010 Hb_106321_010 Hb_106321_010 Hb_004519_010--Hb_106321_010 Hb_000844_090 Hb_000844_090 Hb_004519_010--Hb_000844_090 Hb_001019_210--Hb_000215_420 Hb_001019_210--Hb_079394_010 Hb_001019_210--Hb_106321_010 Hb_000566_110 Hb_000566_110 Hb_001019_210--Hb_000566_110 Hb_001004_130 Hb_001004_130 Hb_079394_010--Hb_001004_130 Hb_005333_210 Hb_005333_210 Hb_079394_010--Hb_005333_210 Hb_008376_020 Hb_008376_020 Hb_079394_010--Hb_008376_020 Hb_004709_030 Hb_004709_030 Hb_079394_010--Hb_004709_030 Hb_010053_010 Hb_010053_010 Hb_024948_010--Hb_010053_010 Hb_000431_140 Hb_000431_140 Hb_024948_010--Hb_000431_140 Hb_000128_050 Hb_000128_050 Hb_024948_010--Hb_000128_050 Hb_164300_010 Hb_164300_010 Hb_024948_010--Hb_164300_010 Hb_000552_030 Hb_000552_030 Hb_024948_010--Hb_000552_030 Hb_000215_420--Hb_106321_010 Hb_000215_420--Hb_000101_370 Hb_000705_100 Hb_000705_100 Hb_000215_420--Hb_000705_100 Hb_000705_090 Hb_000705_090 Hb_000215_420--Hb_000705_090 Hb_000101_370--Hb_164300_010 Hb_001377_480 Hb_001377_480 Hb_000101_370--Hb_001377_480 Hb_027242_010 Hb_027242_010 Hb_000101_370--Hb_027242_010 Hb_002081_220 Hb_002081_220 Hb_000101_370--Hb_002081_220 Hb_006573_260 Hb_006573_260 Hb_000101_370--Hb_006573_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.020584 0 2.08517 0.621922 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.21339 0.684842

CAGE analysis