Hb_000552_030

Information

Type -
Description -
Location Contig552: 23283-26083
Sequence    

Annotation

kegg
ID rcu:RCOM_0058240
description glucose-6-phosphate 1-dehydrogenase, putative (EC:1.1.1.49)
nr
ID XP_002534395.1
description glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
swissprot
ID Q43839
description Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9T826
description Glucose-6-phosphate 1-dehydrogenase OS=Ricinus communis GN=RCOM_0058240 PE=3 SV=1
Gene Ontology
ID GO:0009570
description glucose-6-phosphate 1- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48294: 23638-23822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000552_030 0.0 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
2 Hb_173764_010 0.0893344095 - - protein binding protein, putative [Ricinus communis]
3 Hb_000128_050 0.1041572874 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010053_010 0.1192598192 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
5 Hb_002081_190 0.1291996446 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
6 Hb_003549_010 0.1320398752 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
7 Hb_027028_010 0.135766677 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
8 Hb_000679_280 0.1433761929 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
9 Hb_003119_120 0.1463521072 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
10 Hb_030736_030 0.1479417176 - - hypothetical protein VITISV_006651 [Vitis vinifera]
11 Hb_001366_380 0.1507837866 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
12 Hb_024948_010 0.1555547209 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
13 Hb_002498_290 0.1561080897 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
14 Hb_006316_090 0.1571034108 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_036182_010 0.1573325127 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
16 Hb_000958_040 0.1597073308 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
17 Hb_002805_260 0.1600962925 - - conserved hypothetical protein [Ricinus communis]
18 Hb_028013_030 0.1617090309 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_002081_220 0.1679452529 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
20 Hb_001769_150 0.1699536743 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]

Gene co-expression network

sample Hb_000552_030 Hb_000552_030 Hb_173764_010 Hb_173764_010 Hb_000552_030--Hb_173764_010 Hb_000128_050 Hb_000128_050 Hb_000552_030--Hb_000128_050 Hb_010053_010 Hb_010053_010 Hb_000552_030--Hb_010053_010 Hb_002081_190 Hb_002081_190 Hb_000552_030--Hb_002081_190 Hb_003549_010 Hb_003549_010 Hb_000552_030--Hb_003549_010 Hb_027028_010 Hb_027028_010 Hb_000552_030--Hb_027028_010 Hb_173764_010--Hb_000128_050 Hb_173764_010--Hb_002081_190 Hb_173764_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_173764_010--Hb_000679_280 Hb_002498_290 Hb_002498_290 Hb_173764_010--Hb_002498_290 Hb_000128_050--Hb_002081_190 Hb_000343_220 Hb_000343_220 Hb_000128_050--Hb_000343_220 Hb_000128_050--Hb_010053_010 Hb_001366_380 Hb_001366_380 Hb_000128_050--Hb_001366_380 Hb_002081_220 Hb_002081_220 Hb_010053_010--Hb_002081_220 Hb_024948_010 Hb_024948_010 Hb_010053_010--Hb_024948_010 Hb_164300_010 Hb_164300_010 Hb_010053_010--Hb_164300_010 Hb_010053_010--Hb_002081_190 Hb_002081_190--Hb_000343_220 Hb_002081_190--Hb_001366_380 Hb_002081_190--Hb_002498_290 Hb_000272_010 Hb_000272_010 Hb_002081_190--Hb_000272_010 Hb_003549_010--Hb_000679_280 Hb_003549_010--Hb_002498_290 Hb_030736_030 Hb_030736_030 Hb_003549_010--Hb_030736_030 Hb_003549_010--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_003549_010--Hb_003119_120 Hb_027028_010--Hb_003119_120 Hb_027028_010--Hb_000679_280 Hb_002805_260 Hb_002805_260 Hb_027028_010--Hb_002805_260 Hb_027028_010--Hb_173764_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0281852 3.71665 0.887755 0 0.0103313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0360951 2.03441 0.120659

CAGE analysis