Hb_000679_280

Information

Type -
Description -
Location Contig679: 195640-198805
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27120g
description POPTRDRAFT_561906; hypothetical protein
nr
ID XP_002309634.2
description hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9HAF0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27120g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53712: 199025-200359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_280 0.0 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
2 Hb_002498_290 0.0227487994 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
3 Hb_003549_010 0.037339964 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
4 Hb_030736_030 0.0794931087 - - hypothetical protein VITISV_006651 [Vitis vinifera]
5 Hb_173764_010 0.1122712624 - - protein binding protein, putative [Ricinus communis]
6 Hb_027028_010 0.1228805758 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
7 Hb_151094_020 0.1263564476 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
8 Hb_003119_120 0.1269349358 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
9 Hb_002081_190 0.1281146367 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
10 Hb_135673_010 0.1300829195 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
11 Hb_000438_030 0.1327878517 - - -
12 Hb_001006_050 0.1337873546 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
13 Hb_000128_050 0.1375959464 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000552_030 0.1433761929 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
15 Hb_103452_010 0.1437193858 - - hypothetical protein VITISV_027174 [Vitis vinifera]
16 Hb_147060_010 0.1491873092 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
17 Hb_010812_130 0.1524492914 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
18 Hb_005356_030 0.1551441721 - - protein binding protein, putative [Ricinus communis]
19 Hb_036182_010 0.1619270774 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
20 Hb_028013_030 0.1716506286 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000679_280 Hb_000679_280 Hb_002498_290 Hb_002498_290 Hb_000679_280--Hb_002498_290 Hb_003549_010 Hb_003549_010 Hb_000679_280--Hb_003549_010 Hb_030736_030 Hb_030736_030 Hb_000679_280--Hb_030736_030 Hb_173764_010 Hb_173764_010 Hb_000679_280--Hb_173764_010 Hb_027028_010 Hb_027028_010 Hb_000679_280--Hb_027028_010 Hb_151094_020 Hb_151094_020 Hb_000679_280--Hb_151094_020 Hb_002498_290--Hb_003549_010 Hb_002498_290--Hb_030736_030 Hb_002498_290--Hb_151094_020 Hb_135673_010 Hb_135673_010 Hb_002498_290--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_002498_290--Hb_001006_050 Hb_003549_010--Hb_030736_030 Hb_003549_010--Hb_173764_010 Hb_003549_010--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_003549_010--Hb_003119_120 Hb_030736_030--Hb_151094_020 Hb_030736_030--Hb_135673_010 Hb_030736_030--Hb_001006_050 Hb_000552_030 Hb_000552_030 Hb_173764_010--Hb_000552_030 Hb_000128_050 Hb_000128_050 Hb_173764_010--Hb_000128_050 Hb_002081_190 Hb_002081_190 Hb_173764_010--Hb_002081_190 Hb_173764_010--Hb_002498_290 Hb_027028_010--Hb_003119_120 Hb_002805_260 Hb_002805_260 Hb_027028_010--Hb_002805_260 Hb_027028_010--Hb_000552_030 Hb_027028_010--Hb_173764_010 Hb_147060_010 Hb_147060_010 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_151094_020--Hb_001006_050 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0621252 0.0250725 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0402214 0

CAGE analysis