Hb_000215_420

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig215: 385002-386171
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25060g
description POPTRDRAFT_561710; hypothetical protein
nr
ID XP_011019548.1
description PREDICTED: transcription factor RAX2-like [Populus euphratica]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9HE03
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25060g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor rax2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_420 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
2 Hb_106321_010 0.1070459436 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
3 Hb_000101_370 0.1145596765 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
4 Hb_004519_010 0.1145622108 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
5 Hb_000705_100 0.1236539138 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_000705_090 0.1264844499 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
7 Hb_001019_210 0.1373170499 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
8 Hb_001005_210 0.1393385589 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
9 Hb_000705_060 0.1412484551 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
10 Hb_164300_010 0.1481106794 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
11 Hb_000566_110 0.1528563994 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
12 Hb_005168_030 0.1542609769 - - unknown [Zea mays]
13 Hb_000075_030 0.1604765232 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
14 Hb_129204_050 0.1606252653 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
15 Hb_000832_250 0.1610312975 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
16 Hb_000484_040 0.1654469013 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
17 Hb_000844_090 0.1677867078 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
18 Hb_006573_260 0.1715795757 - - -
19 Hb_002989_030 0.1727986469 - - PREDICTED: protein GAST1-like [Populus euphratica]
20 Hb_002003_030 0.173759685 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000215_420 Hb_000215_420 Hb_106321_010 Hb_106321_010 Hb_000215_420--Hb_106321_010 Hb_000101_370 Hb_000101_370 Hb_000215_420--Hb_000101_370 Hb_004519_010 Hb_004519_010 Hb_000215_420--Hb_004519_010 Hb_000705_100 Hb_000705_100 Hb_000215_420--Hb_000705_100 Hb_000705_090 Hb_000705_090 Hb_000215_420--Hb_000705_090 Hb_001019_210 Hb_001019_210 Hb_000215_420--Hb_001019_210 Hb_005168_030 Hb_005168_030 Hb_106321_010--Hb_005168_030 Hb_123560_020 Hb_123560_020 Hb_106321_010--Hb_123560_020 Hb_106321_010--Hb_000705_090 Hb_011440_010 Hb_011440_010 Hb_106321_010--Hb_011440_010 Hb_002003_030 Hb_002003_030 Hb_106321_010--Hb_002003_030 Hb_164300_010 Hb_164300_010 Hb_000101_370--Hb_164300_010 Hb_001377_480 Hb_001377_480 Hb_000101_370--Hb_001377_480 Hb_027242_010 Hb_027242_010 Hb_000101_370--Hb_027242_010 Hb_002081_220 Hb_002081_220 Hb_000101_370--Hb_002081_220 Hb_006573_260 Hb_006573_260 Hb_000101_370--Hb_006573_260 Hb_004519_010--Hb_001019_210 Hb_000832_250 Hb_000832_250 Hb_004519_010--Hb_000832_250 Hb_079394_010 Hb_079394_010 Hb_004519_010--Hb_079394_010 Hb_004519_010--Hb_106321_010 Hb_000844_090 Hb_000844_090 Hb_004519_010--Hb_000844_090 Hb_129204_050 Hb_129204_050 Hb_000705_100--Hb_129204_050 Hb_000705_060 Hb_000705_060 Hb_000705_100--Hb_000705_060 Hb_000705_100--Hb_000705_090 Hb_001101_020 Hb_001101_020 Hb_000705_100--Hb_001101_020 Hb_001775_050 Hb_001775_050 Hb_000705_100--Hb_001775_050 Hb_000705_090--Hb_164300_010 Hb_000705_090--Hb_005168_030 Hb_000705_090--Hb_002003_030 Hb_001019_210--Hb_000832_250 Hb_001019_210--Hb_079394_010 Hb_001019_210--Hb_106321_010 Hb_000566_110 Hb_000566_110 Hb_001019_210--Hb_000566_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0284755 0.413595 0.0471173 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.763545 0.102742

CAGE analysis