Hb_129204_050

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig129204: 35862-37133
Sequence    

Annotation

kegg
ID pmum:103340785
description myb-related protein 330-like
nr
ID XP_008242452.1
description PREDICTED: myb-related protein 330-like [Prunus mume]
swissprot
ID P81395
description Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1
trembl
ID M5VX13
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026975mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor rax2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129204_050 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
2 Hb_001775_050 0.0868891794 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
3 Hb_000705_100 0.0969966055 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_000705_060 0.1187052592 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
5 Hb_001101_020 0.1224193026 - - hypothetical protein RCOM_0615680 [Ricinus communis]
6 Hb_001369_320 0.1243993154 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
7 Hb_000057_160 0.1349139262 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
8 Hb_020902_020 0.1416202552 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
9 Hb_014387_040 0.1502529666 - - PREDICTED: uncharacterized protein LOC105636953 [Jatropha curcas]
10 Hb_000215_420 0.1606252653 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
11 Hb_005653_100 0.1620099505 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
12 Hb_002989_030 0.1699366409 - - PREDICTED: protein GAST1-like [Populus euphratica]
13 Hb_001454_300 0.176743504 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_000705_090 0.1798028532 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
15 Hb_002435_080 0.1815994619 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001609_080 0.1839401281 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
17 Hb_000625_130 0.184456598 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
18 Hb_116469_010 0.1872709818 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
19 Hb_142522_030 0.1893158363 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
20 Hb_008775_050 0.1895667777 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]

Gene co-expression network

sample Hb_129204_050 Hb_129204_050 Hb_001775_050 Hb_001775_050 Hb_129204_050--Hb_001775_050 Hb_000705_100 Hb_000705_100 Hb_129204_050--Hb_000705_100 Hb_000705_060 Hb_000705_060 Hb_129204_050--Hb_000705_060 Hb_001101_020 Hb_001101_020 Hb_129204_050--Hb_001101_020 Hb_001369_320 Hb_001369_320 Hb_129204_050--Hb_001369_320 Hb_000057_160 Hb_000057_160 Hb_129204_050--Hb_000057_160 Hb_020902_020 Hb_020902_020 Hb_001775_050--Hb_020902_020 Hb_001775_050--Hb_001369_320 Hb_001775_050--Hb_000057_160 Hb_005653_100 Hb_005653_100 Hb_001775_050--Hb_005653_100 Hb_001454_300 Hb_001454_300 Hb_001775_050--Hb_001454_300 Hb_000705_100--Hb_000705_060 Hb_000215_420 Hb_000215_420 Hb_000705_100--Hb_000215_420 Hb_000705_090 Hb_000705_090 Hb_000705_100--Hb_000705_090 Hb_000705_100--Hb_001101_020 Hb_000705_100--Hb_001775_050 Hb_000705_060--Hb_000215_420 Hb_000705_060--Hb_001775_050 Hb_000705_060--Hb_001369_320 Hb_000705_060--Hb_000705_090 Hb_001377_480 Hb_001377_480 Hb_001101_020--Hb_001377_480 Hb_142522_030 Hb_142522_030 Hb_001101_020--Hb_142522_030 Hb_111985_120 Hb_111985_120 Hb_001101_020--Hb_111985_120 Hb_001789_010 Hb_001789_010 Hb_001101_020--Hb_001789_010 Hb_187211_010 Hb_187211_010 Hb_001101_020--Hb_187211_010 Hb_001369_320--Hb_001454_300 Hb_001279_220 Hb_001279_220 Hb_001369_320--Hb_001279_220 Hb_001369_320--Hb_000057_160 Hb_001369_320--Hb_020902_020 Hb_000057_160--Hb_001279_220 Hb_000057_160--Hb_001454_300 Hb_029571_010 Hb_029571_010 Hb_000057_160--Hb_029571_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.05685 4.48358 0.160351 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.5924 0.563192

CAGE analysis