Hb_029571_010

Information

Type -
Description -
Location Contig29571: 10032-12780
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15990g
description QUARTET 3 family protein
nr
ID XP_012081250.1
description PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
swissprot
ID O49432
description Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
trembl
ID A0A067K1R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18189 PE=4 SV=1
Gene Ontology
ID GO:0003006
description polygalacturonase qrt3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30899: 10016-10462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029571_010 0.0 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
2 Hb_002248_020 0.0537124962 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
3 Hb_004055_180 0.0997814807 - - cell wall invertase [Manihot esculenta]
4 Hb_004774_060 0.1064544231 - - -
5 Hb_001279_220 0.1067932848 - - protein binding protein, putative [Ricinus communis]
6 Hb_001464_010 0.1097121361 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
7 Hb_097908_010 0.1114717659 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
8 Hb_000659_010 0.1141630728 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
9 Hb_004222_010 0.1267937019 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
10 Hb_007417_020 0.1269957453 - - Reticuline oxidase precursor, putative [Ricinus communis]
11 Hb_175968_010 0.1277512323 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
12 Hb_001879_040 0.1351445766 - - hypothetical protein CISIN_1g0033281mg, partial [Citrus sinensis]
13 Hb_007491_010 0.1372410459 - - Spotted leaf protein, putative [Ricinus communis]
14 Hb_001936_030 0.1375768719 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
15 Hb_000057_160 0.1383638119 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
16 Hb_003237_040 0.1429868486 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000487_150 0.1443286036 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
18 Hb_001003_020 0.1449087627 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
19 Hb_001369_320 0.150594001 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
20 Hb_000567_300 0.1536644987 - - PREDICTED: protein YLS9-like [Jatropha curcas]

Gene co-expression network

sample Hb_029571_010 Hb_029571_010 Hb_002248_020 Hb_002248_020 Hb_029571_010--Hb_002248_020 Hb_004055_180 Hb_004055_180 Hb_029571_010--Hb_004055_180 Hb_004774_060 Hb_004774_060 Hb_029571_010--Hb_004774_060 Hb_001279_220 Hb_001279_220 Hb_029571_010--Hb_001279_220 Hb_001464_010 Hb_001464_010 Hb_029571_010--Hb_001464_010 Hb_097908_010 Hb_097908_010 Hb_029571_010--Hb_097908_010 Hb_002248_020--Hb_004774_060 Hb_002248_020--Hb_001279_220 Hb_001936_030 Hb_001936_030 Hb_002248_020--Hb_001936_030 Hb_002248_020--Hb_004055_180 Hb_002218_040 Hb_002218_040 Hb_002248_020--Hb_002218_040 Hb_004055_180--Hb_004774_060 Hb_004055_180--Hb_097908_010 Hb_004055_180--Hb_001464_010 Hb_000563_610 Hb_000563_610 Hb_004055_180--Hb_000563_610 Hb_175968_010 Hb_175968_010 Hb_004055_180--Hb_175968_010 Hb_007417_020 Hb_007417_020 Hb_004055_180--Hb_007417_020 Hb_004774_060--Hb_175968_010 Hb_004774_060--Hb_001279_220 Hb_033363_080 Hb_033363_080 Hb_004774_060--Hb_033363_080 Hb_004774_060--Hb_097908_010 Hb_000659_010 Hb_000659_010 Hb_004774_060--Hb_000659_010 Hb_001279_220--Hb_175968_010 Hb_001454_300 Hb_001454_300 Hb_001279_220--Hb_001454_300 Hb_001369_320 Hb_001369_320 Hb_001279_220--Hb_001369_320 Hb_001279_220--Hb_000659_010 Hb_004712_080 Hb_004712_080 Hb_001279_220--Hb_004712_080 Hb_001464_010--Hb_007417_020 Hb_135392_010 Hb_135392_010 Hb_001464_010--Hb_135392_010 Hb_001134_040 Hb_001134_040 Hb_001464_010--Hb_001134_040 Hb_007491_010 Hb_007491_010 Hb_001464_010--Hb_007491_010 Hb_001464_010--Hb_097908_010 Hb_097908_010--Hb_175968_010 Hb_097908_010--Hb_000659_010 Hb_097908_010--Hb_007417_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0265529 0.398583 0.0740373 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.33908 0.200267

CAGE analysis