Hb_000563_610

Information

Type -
Description -
Location Contig563: 457157-464193
Sequence    

Annotation

kegg
ID rcu:RCOM_0681430
description nucleotide binding protein, putative
nr
ID XP_012083956.1
description PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
swissprot
ID C6L7U1
description Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2
trembl
ID A0A067K6C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48950: 456330-457234 , PASA_asmbl_48951: 462861-463495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_610 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
2 Hb_004055_180 0.0923736146 - - cell wall invertase [Manihot esculenta]
3 Hb_000739_130 0.0983637337 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000245_140 0.1009922203 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
5 Hb_097908_010 0.1049688764 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
6 Hb_012796_050 0.1116004794 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
7 Hb_004774_060 0.1130260666 - - -
8 Hb_004445_090 0.1144375226 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000204_030 0.1151619948 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_148914_010 0.1164118439 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_010407_120 0.1178595374 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
12 Hb_029510_110 0.1212770974 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
13 Hb_000281_200 0.1213865368 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_061195_010 0.1250658072 - - Galactose oxidase precursor, putative [Ricinus communis]
15 Hb_007527_020 0.1254992693 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
16 Hb_000648_120 0.1255459798 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
17 Hb_033363_080 0.1262155406 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
18 Hb_001464_010 0.1267147407 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
19 Hb_001134_040 0.1271897694 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
20 Hb_000438_190 0.1287333134 - - PREDICTED: peroxidase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000563_610 Hb_000563_610 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060 Hb_004055_180--Hb_004774_060 Hb_004055_180--Hb_097908_010 Hb_001464_010 Hb_001464_010 Hb_004055_180--Hb_001464_010 Hb_175968_010 Hb_175968_010 Hb_004055_180--Hb_175968_010 Hb_007417_020 Hb_007417_020 Hb_004055_180--Hb_007417_020 Hb_007532_050 Hb_007532_050 Hb_000739_130--Hb_007532_050 Hb_007527_020 Hb_007527_020 Hb_000739_130--Hb_007527_020 Hb_010407_120 Hb_010407_120 Hb_000739_130--Hb_010407_120 Hb_004445_090 Hb_004445_090 Hb_000739_130--Hb_004445_090 Hb_159769_010 Hb_159769_010 Hb_000739_130--Hb_159769_010 Hb_002232_370 Hb_002232_370 Hb_000245_140--Hb_002232_370 Hb_002965_020 Hb_002965_020 Hb_000245_140--Hb_002965_020 Hb_148914_010 Hb_148914_010 Hb_000245_140--Hb_148914_010 Hb_000976_020 Hb_000976_020 Hb_000245_140--Hb_000976_020 Hb_000648_120 Hb_000648_120 Hb_000245_140--Hb_000648_120 Hb_097908_010--Hb_004774_060 Hb_097908_010--Hb_175968_010 Hb_097908_010--Hb_001464_010 Hb_000659_010 Hb_000659_010 Hb_097908_010--Hb_000659_010 Hb_097908_010--Hb_007417_020 Hb_012796_050--Hb_148914_010 Hb_002048_010 Hb_002048_010 Hb_012796_050--Hb_002048_010 Hb_012796_050--Hb_002232_370 Hb_000438_190 Hb_000438_190 Hb_012796_050--Hb_000438_190 Hb_004712_080 Hb_004712_080 Hb_012796_050--Hb_004712_080 Hb_033363_080 Hb_033363_080 Hb_012796_050--Hb_033363_080 Hb_004774_060--Hb_175968_010 Hb_001279_220 Hb_001279_220 Hb_004774_060--Hb_001279_220 Hb_004774_060--Hb_033363_080 Hb_004774_060--Hb_000659_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0460925 0.478788 0.644308 0.546004 0.0344859 0.0205965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0307712 0.0242162 0.0620513 9.91853 0.380818

CAGE analysis